Wall clock time and date at job start Sun Mar 29 2020 22:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47046 * 2 1 4 4 C 1.34953 * 126.03718 * 125.00175 * 3 2 1 5 5 C 1.35312 * 107.74266 * 180.24977 * 4 3 2 6 6 C 1.39863 * 107.92527 * 359.64076 * 5 4 3 7 7 C 1.50703 * 125.90145 * 180.14385 * 6 5 4 8 8 N 1.46905 * 109.46965 * 95.23369 * 7 6 5 9 9 C 1.46899 * 110.99581 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47052 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99905 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00602 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99911 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00785 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47250 * 89.99595 * 14 12 10 16 16 H 1.48491 * 109.47383 * 210.00126 * 14 12 10 17 17 H 1.48502 * 109.47007 * 330.00256 * 14 12 10 18 18 N 1.30837 * 108.19940 * 0.36269 * 6 5 4 19 19 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47070 * 300.00086 * 1 2 3 21 21 H 1.08998 * 109.47149 * 59.99882 * 1 2 3 22 22 H 1.08999 * 109.47688 * 240.00288 * 2 1 3 23 23 H 1.08997 * 109.47597 * 120.00405 * 2 1 3 24 24 H 1.08002 * 126.12372 * 359.97438 * 4 3 2 25 25 H 1.08008 * 126.03698 * 179.76435 * 5 4 3 26 26 H 1.09001 * 109.47131 * 215.23144 * 7 6 5 27 27 H 1.08998 * 109.46844 * 335.23437 * 7 6 5 28 28 H 1.00899 * 110.99775 * 56.04551 * 8 7 6 29 29 H 1.08993 * 109.47372 * 299.99772 * 9 8 7 30 30 H 1.09002 * 109.47389 * 60.00371 * 9 8 7 31 31 H 0.96999 * 120.00635 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0673 3.2151 0.5492 6 6 2.3116 3.4728 -0.5992 7 6 2.2340 4.7889 -1.3291 8 7 3.1984 4.7918 -2.4374 9 6 3.1511 6.0625 -3.1729 10 6 4.1519 6.0286 -4.2990 11 1 4.7618 5.1506 -4.4532 12 6 4.2884 7.1178 -5.1332 13 7 3.5455 8.1867 -4.9458 14 14 5.5284 7.0755 -6.5296 15 1 4.8801 6.5344 -7.7511 16 1 6.0193 8.4510 -6.7976 17 1 6.6717 6.2071 -6.1501 18 7 1.6801 2.3750 -0.9275 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 3.3185 1.4127 1.7363 25 1 3.6964 3.9234 1.0680 26 1 1.2272 4.9270 -1.7233 27 1 2.4693 5.6006 -0.6407 28 1 3.0413 4.0098 -3.0553 29 1 2.1508 6.2099 -3.5797 30 1 3.3930 6.8828 -2.4970 31 1 3.6417 8.9532 -5.5324 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:00 Heat of formation + Delta-G solvation = 47.396395 kcal Electronic energy + Delta-G solvation = -13019.443344 eV Core-core repulsion = 10722.382726 eV Total energy + Delta-G solvation = -2297.060618 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.05326 -37.31112 -35.37976 -34.35691 -31.56109 -30.47150 -28.99527 -26.41095 -23.94091 -23.29062 -21.96381 -20.55716 -18.63590 -17.83074 -16.77419 -16.34913 -16.17120 -15.39340 -15.19905 -15.01905 -14.32323 -14.23568 -13.70271 -13.26980 -13.17805 -13.01526 -12.80724 -12.65262 -12.52770 -12.23281 -12.02329 -11.48526 -11.30102 -10.66470 -10.22115 -9.43799 -9.17007 -8.22238 -6.33753 0.99524 1.41704 1.43917 1.55883 1.69412 1.85580 2.41589 3.10846 3.53111 3.78600 3.95218 4.07792 4.14854 4.29962 4.39498 4.59186 4.72071 4.83543 4.93255 4.99504 5.06318 5.17176 5.24603 5.26283 5.59277 5.71038 5.99797 6.27791 6.38967 6.62501 6.82086 6.85222 7.36735 8.89604 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057515 B = 0.005319 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.716797 B = 5262.620127 C = 5357.517458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.376 5.376 4 C 0.064 3.936 5 C -0.280 4.280 6 C 0.066 3.934 7 C 0.141 3.859 8 N -0.679 5.679 9 C 0.208 3.792 10 C -0.538 4.538 11 H 0.061 0.939 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.976 3.024 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.265 1.265 18 N -0.332 5.332 19 H 0.102 0.898 20 H 0.055 0.945 21 H 0.040 0.960 22 H 0.084 0.916 23 H 0.136 0.864 24 H 0.221 0.779 25 H 0.154 0.846 26 H 0.024 0.976 27 H 0.088 0.912 28 H 0.331 0.669 29 H -0.038 1.038 30 H 0.009 0.991 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -16.461 12.696 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.002 3.998 3 N -0.159 5.159 4 C -0.082 4.082 5 C -0.310 4.310 6 C -0.099 4.099 7 C 0.010 3.990 8 N -0.310 5.310 9 C 0.080 3.920 10 C -0.576 4.576 11 H 0.080 0.920 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.800 3.200 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.190 1.190 18 N -0.156 5.156 19 H 0.120 0.880 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.102 0.898 23 H 0.154 0.846 24 H 0.237 0.763 25 H 0.172 0.828 26 H 0.042 0.958 27 H 0.106 0.894 28 H 0.147 0.853 29 H -0.020 1.020 30 H 0.028 0.972 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.357 -16.802 12.225 21.049 hybrid contribution 0.033 0.813 -0.736 1.097 sum -3.324 -15.990 11.489 19.968 Atomic orbital electron populations 1.22011 0.93924 1.03935 1.01903 1.22068 0.96115 0.75916 1.05689 1.49069 1.35582 1.10641 1.20623 1.23168 0.94380 0.94060 0.96602 1.21641 1.09693 0.98212 1.01409 1.22209 0.96881 0.94300 0.96521 1.20167 0.93768 0.91791 0.93316 1.60590 1.51370 1.05665 1.13326 1.19265 0.93770 0.87006 0.91955 1.21503 1.21336 1.01590 1.13195 0.92032 1.25954 0.98272 0.94685 1.00639 1.70089 1.41484 1.05678 1.40061 0.85289 0.78729 0.77600 0.78405 1.19723 1.20349 1.18957 1.77180 1.25516 0.97719 1.15217 0.87961 0.92629 0.94044 0.89751 0.84608 0.76262 0.82815 0.95793 0.89359 0.85297 1.02009 0.97247 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.10 71.98 0.73 -1.75 16 2 C 0.12 1.87 7.23 86.38 0.62 2.49 16 3 N -0.38 -9.57 3.68 -348.06 -1.28 -10.85 16 4 C 0.06 1.43 11.45 83.54 0.96 2.39 16 5 C -0.28 -8.30 10.74 21.99 0.24 -8.06 16 6 C 0.07 2.42 6.73 43.10 0.29 2.71 16 7 C 0.14 5.78 6.25 85.56 0.53 6.31 16 8 N -0.68 -32.65 6.48 -521.98 -3.38 -36.03 16 9 C 0.21 11.79 5.44 85.56 0.47 12.25 16 10 C -0.54 -32.14 9.32 25.60 0.24 -31.90 16 11 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 12 C 0.00 0.16 5.46 84.65 0.46 0.63 16 13 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 14 Si 0.98 45.45 29.54 68.60 2.03 47.47 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 N -0.33 -11.76 12.42 -47.39 -0.59 -12.35 16 19 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 20 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 23 H 0.14 0.93 8.07 -2.39 -0.02 0.91 16 24 H 0.22 2.42 8.06 -2.91 -0.02 2.40 16 25 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 28 H 0.33 15.91 8.72 -89.70 -0.78 15.13 16 29 H -0.04 -2.29 8.14 -2.39 -0.02 -2.31 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -73.19 273.58 1.92 -71.27 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.32 Total: 12.77 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.53 Total: -14.93 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.97 Total: -116.58 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.19 1.92 -71.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.671 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds