Wall clock time and date at job start Sun Mar 29 2020 22:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48493 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47311 * 300.00353 * 3 2 1 6 6 H 1.48503 * 109.46737 * 60.00304 * 3 2 1 7 7 C 1.37881 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99404 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00114 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99660 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46833 * 179.97438 * 11 10 9 13 13 H 1.09003 * 115.55880 * 29.30638 * 12 11 10 14 14 C 1.53070 * 117.49576 * 243.60315 * 12 11 10 15 15 C 1.53001 * 117.50196 * 174.99755 * 12 11 10 16 16 H 1.09002 * 117.49542 * 359.97438 * 15 12 11 17 17 C 1.52995 * 117.50090 * 214.98043 * 15 12 11 18 18 C 1.53785 * 113.69093 * 81.02377 * 17 15 12 19 19 C 1.53779 * 87.08093 * 139.99088 * 18 17 15 20 20 C 1.53781 * 113.61293 * 178.56002 * 17 15 12 21 21 H 0.96997 * 119.99891 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47006 * 60.00105 * 9 7 2 23 23 H 1.09005 * 109.47477 * 300.00326 * 9 7 2 24 24 H 1.00894 * 111.00038 * 56.04896 * 10 9 7 25 25 H 1.08994 * 109.47616 * 60.00348 * 11 10 9 26 26 H 1.09000 * 109.47218 * 299.99155 * 11 10 9 27 27 H 1.08998 * 117.51891 * 145.03506 * 14 12 11 28 28 H 1.09001 * 117.49234 * 359.97438 * 14 12 11 29 29 H 1.09002 * 112.85043 * 309.75261 * 17 15 12 30 30 H 1.09003 * 113.60734 * 254.54208 * 18 17 15 31 31 H 1.08996 * 113.61146 * 25.43706 * 18 17 15 32 32 H 1.08994 * 113.61314 * 220.01752 * 19 18 17 33 33 H 1.09003 * 113.61186 * 89.11185 * 19 18 17 34 34 H 1.09005 * 113.61302 * 334.47929 * 20 17 15 35 35 H 1.08993 * 113.62030 * 105.38774 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 1.5053 -4.9070 -0.0032 12 6 2.5302 -6.0431 -0.0035 13 1 3.4816 -5.8183 0.4787 14 6 2.5563 -6.9710 -1.2206 15 6 1.9996 -7.4734 0.1131 16 1 0.9203 -7.6050 0.1904 17 6 2.8449 -8.4787 0.8976 18 6 2.6621 -8.3834 2.4216 19 6 2.7061 -9.9204 2.4440 20 6 2.2122 -9.8774 0.9882 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5563 -0.8920 23 1 0.6240 -2.5575 0.8880 24 1 2.8399 -3.5491 0.7804 25 1 0.8814 -4.9809 -0.8939 26 1 0.8795 -4.9821 0.8861 27 1 3.5246 -7.3568 -1.5391 28 1 1.8429 -6.7720 -2.0204 29 1 3.8884 -8.4911 0.5829 30 1 3.5027 -7.9150 2.9336 31 1 1.6991 -7.9697 2.7208 32 1 1.9912 -10.3677 3.1346 33 1 3.7117 -10.3269 2.5519 34 1 1.1261 -9.8722 0.8956 35 1 2.6894 -10.6152 0.3433 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591771462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:47 Heat of formation + Delta-G solvation = 8.751147 kcal Electronic energy + Delta-G solvation = -13212.644055 eV Core-core repulsion = 11017.447997 eV Total energy + Delta-G solvation = -2195.196058 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26624 -37.98557 -36.17586 -34.28241 -29.65351 -27.15609 -26.42638 -25.77563 -23.43638 -22.09567 -21.33529 -20.26426 -18.57098 -16.81189 -16.61383 -16.33038 -16.19783 -15.27771 -14.91563 -14.40775 -14.15379 -13.52225 -13.38749 -13.27238 -13.26883 -12.76489 -12.66352 -12.49979 -12.21621 -12.05084 -11.64562 -11.44439 -11.33143 -11.26360 -10.71393 -10.54749 -10.44462 -9.12661 -8.24335 -6.36178 1.40943 1.41951 1.56234 2.39387 2.80427 3.08883 3.45353 3.79113 3.81309 3.85168 4.01530 4.13950 4.26372 4.36478 4.47493 4.52215 4.71604 4.77049 4.90251 4.93025 4.96295 4.98574 5.06652 5.12892 5.15758 5.22882 5.30222 5.35890 5.46572 5.60332 5.68278 5.99715 6.42576 6.70337 6.86967 7.35144 8.87830 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.067476 B = 0.004681 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.860332 B = 5980.139510 C = 6058.092907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.686 5.686 11 C 0.092 3.908 12 C -0.147 4.147 13 H 0.103 0.897 14 C -0.166 4.166 15 C -0.127 4.127 16 H 0.099 0.901 17 C -0.080 4.080 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.130 4.130 21 H 0.266 0.734 22 H -0.002 1.002 23 H -0.040 1.040 24 H 0.335 0.665 25 H 0.054 0.946 26 H 0.015 0.985 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -18.291 2.840 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.078 3.922 10 N -0.317 5.317 11 C -0.037 4.037 12 C -0.166 4.166 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.146 4.146 16 H 0.117 0.883 17 C -0.099 4.099 18 C -0.178 4.178 19 C -0.175 4.175 20 C -0.168 4.168 21 H 0.075 0.925 22 H 0.016 0.984 23 H -0.022 1.022 24 H 0.152 0.848 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.626 -18.177 2.151 19.149 hybrid contribution -0.477 1.100 0.799 1.440 sum 5.149 -17.077 2.950 18.079 Atomic orbital electron populations 1.70106 1.07909 1.28046 1.51511 1.26008 0.95828 1.03563 0.94427 0.85220 0.78895 0.77955 0.77832 1.18570 1.20271 1.20150 1.21582 0.93871 0.91359 1.50706 0.91635 1.19229 0.90717 0.89134 0.93093 1.60521 1.20503 1.01461 1.49203 1.21458 0.94811 0.88703 0.98754 1.22168 1.00158 0.90051 1.04188 0.87878 1.23143 1.03005 1.02850 0.91247 1.22439 0.99227 0.93746 0.99203 0.88315 1.22151 0.98737 0.94300 0.94685 1.22921 1.01853 0.97189 0.95834 1.22824 1.02065 0.95601 0.97023 1.22914 1.00797 0.95974 0.97066 0.92540 0.98364 1.02242 0.84763 0.92788 0.96667 0.87714 0.89371 0.88993 0.91761 0.90911 0.91001 0.89397 0.90188 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.54 -31.61 9.32 25.60 0.24 -31.37 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 9 C 0.21 11.57 5.44 85.56 0.47 12.04 16 10 N -0.69 -31.29 6.49 -517.92 -3.36 -34.65 16 11 C 0.09 3.49 5.97 86.31 0.52 4.01 16 12 C -0.15 -4.34 5.67 -10.77 -0.06 -4.40 16 13 H 0.10 3.03 8.13 -2.39 -0.02 3.01 16 14 C -0.17 -4.16 9.89 30.62 0.30 -3.86 16 15 C -0.13 -3.02 5.14 -10.79 -0.06 -3.07 16 16 H 0.10 2.38 8.13 -2.39 -0.02 2.36 16 17 C -0.08 -1.56 3.81 -10.27 -0.04 -1.60 16 18 C -0.14 -2.68 7.65 31.12 0.24 -2.44 16 19 C -0.14 -2.10 8.08 31.12 0.25 -1.84 16 20 C -0.13 -2.10 7.64 31.12 0.24 -1.86 16 21 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 22 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 23 H -0.04 -2.40 8.14 -2.38 -0.02 -2.42 16 24 H 0.34 14.40 8.71 -89.70 -0.78 13.62 16 25 H 0.05 2.12 7.87 -2.39 -0.02 2.10 16 26 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.09 2.29 8.03 -2.39 -0.02 2.27 16 29 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.30 8.09 -2.38 -0.02 1.28 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -64.13 291.15 1.76 -62.37 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.26 Total: 16.67 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 2.56 Total: -33.95 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -3.08 Total: -92.05 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.13 1.76 -62.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591771462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.118 kcal (2) G-P(sol) polarization free energy of solvation -64.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds