Wall clock time and date at job start Sun Mar 29 2020 21:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 162.18558 * 3 2 1 5 5 N 1.46901 * 109.47015 * 322.86907 * 4 3 2 6 6 C 1.47439 * 110.99961 * 69.87688 * 5 4 3 7 7 C 1.54322 * 107.23490 * 123.25626 * 6 5 4 8 8 C 1.55135 * 103.02006 * 22.28319 * 7 6 5 9 9 O 1.42894 * 110.99135 * 82.44025 * 8 7 6 10 10 C 1.50696 * 110.99057 * 206.22070 * 8 7 6 11 11 H 1.08004 * 120.00360 * 118.54663 * 10 8 7 12 12 C 1.37886 * 119.99979 * 298.54456 * 10 8 7 13 13 N 1.31506 * 119.99539 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99771 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47134 * 60.00151 * 14 12 10 16 16 H 1.48502 * 109.46703 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47409 * 299.99667 * 14 12 10 18 18 C 1.47853 * 110.99956 * 190.71742 * 5 4 3 19 19 H 1.08992 * 109.47387 * 294.94171 * 1 2 3 20 20 H 1.09004 * 109.47019 * 54.94831 * 1 2 3 21 21 H 1.09001 * 109.46457 * 174.94463 * 1 2 3 22 22 H 1.09002 * 109.47132 * 82.87190 * 4 3 2 23 23 H 1.09001 * 109.47213 * 202.87220 * 4 3 2 24 24 H 1.09003 * 109.89080 * 242.65955 * 6 5 4 25 25 H 1.08997 * 109.89286 * 3.84786 * 6 5 4 26 26 H 1.09003 * 110.70500 * 140.67082 * 7 6 5 27 27 H 1.09004 * 110.70538 * 263.72555 * 7 6 5 28 28 H 0.96695 * 114.00122 * 61.45498 * 9 8 7 29 29 H 0.97000 * 119.99610 * 180.02562 * 13 12 10 30 30 H 1.09002 * 110.36766 * 332.46788 * 18 5 4 31 31 H 1.08997 * 110.37443 * 94.80755 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 7 4.6087 -1.1020 0.8358 6 6 4.3394 -2.4054 0.2014 7 6 5.6928 -3.1333 0.0598 8 6 6.5742 -2.4448 1.1349 9 8 6.3416 -3.0103 2.4264 10 6 8.0337 -2.5248 0.7685 11 1 8.6001 -1.6197 0.6058 12 6 8.6462 -3.7536 0.6410 13 7 7.9564 -4.8556 0.8386 14 14 10.4556 -3.8527 0.1875 15 1 11.2635 -3.1545 1.2196 16 1 10.8702 -5.2767 0.1147 17 1 10.6715 -3.2056 -1.1315 18 6 6.0640 -0.9836 1.0689 19 1 -0.3634 0.4333 0.9317 20 1 -0.3633 0.5902 -0.8413 21 1 -0.3632 -1.0237 -0.0906 22 1 4.4813 -0.1254 -1.0200 23 1 4.4806 0.9490 0.3992 24 1 3.6672 -2.9911 0.8284 25 1 3.8950 -2.2543 -0.7823 26 1 5.5829 -4.1963 0.2744 27 1 6.1084 -2.9837 -0.9368 28 1 6.5557 -3.9513 2.4880 29 1 8.3873 -5.7200 0.7492 30 1 6.5385 -0.4528 0.2435 31 1 6.2569 -0.4714 2.0115 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150787.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:32 Heat of formation + Delta-G solvation = -0.754321 kcal Electronic energy + Delta-G solvation = -13675.372871 eV Core-core repulsion = 11343.931531 eV Total energy + Delta-G solvation = -2331.441340 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.43046 -35.14247 -33.53218 -32.12864 -30.51800 -28.29642 -27.86228 -25.31345 -23.80489 -20.17216 -19.56768 -17.11177 -16.22054 -15.35227 -14.88601 -14.75306 -14.09870 -13.64538 -13.60622 -13.45807 -12.85340 -12.52761 -12.11359 -11.59650 -11.39733 -11.23719 -11.03395 -10.75455 -10.45205 -10.32679 -9.89215 -9.68721 -9.44808 -9.16848 -8.59159 -8.07392 -7.63415 -6.20548 -4.29116 2.91475 2.99599 3.23909 3.28958 3.31777 4.29557 4.46891 4.87205 5.08408 5.52362 5.57369 5.66005 5.69174 5.75289 5.82280 5.93943 6.10683 6.12210 6.19570 6.47846 6.67325 6.87442 7.07899 7.41354 7.49428 7.62347 7.70847 7.82542 7.94720 8.16707 8.73000 9.39522 9.53062 10.86463 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.067568 B = 0.007004 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.296754 B = 3997.008394 C = 4090.989255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.210 4.210 3 C -0.157 4.157 4 C 0.157 3.843 5 N -0.526 5.526 6 C 0.045 3.955 7 C -0.145 4.145 8 C 0.252 3.748 9 O -0.579 6.579 10 C -0.538 4.538 11 H 0.061 0.939 12 C 0.072 3.928 13 N -0.895 5.895 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.058 3.942 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.377 0.623 29 H 0.267 0.733 30 H 0.050 0.950 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 5.596 -2.971 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.211 4.211 3 C -0.158 4.158 4 C 0.030 3.970 5 N -0.250 5.250 6 C -0.082 4.082 7 C -0.184 4.184 8 C 0.212 3.788 9 O -0.386 6.386 10 C -0.576 4.576 11 H 0.079 0.921 12 C -0.130 4.130 13 N -0.534 5.534 14 Si 0.728 3.272 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.069 4.069 19 H 0.094 0.906 20 H 0.092 0.908 21 H 0.095 0.905 22 H 0.072 0.928 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.226 0.774 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.511 6.047 -2.367 10.705 hybrid contribution 1.542 -0.772 -1.259 2.135 sum -6.969 5.275 -3.627 9.463 Atomic orbital electron populations 1.18752 0.84969 1.02664 1.02447 1.22276 0.93791 1.02103 1.02925 1.22355 0.93465 1.00264 0.99698 1.19185 0.84452 0.96782 0.96571 1.63605 1.16401 1.01137 1.43836 1.22848 0.99116 0.90316 0.95959 1.23277 0.93305 1.01124 1.00668 1.19515 0.91866 0.86785 0.80647 1.86146 1.89725 1.29417 1.33354 1.21508 0.95175 0.92877 1.48051 0.92083 1.25000 0.98521 0.95540 0.93986 1.69731 1.36481 0.97755 1.49412 0.86526 0.84607 0.77044 0.79059 1.20019 1.21146 1.20182 1.23036 0.84534 0.99309 0.99998 0.90584 0.90777 0.90506 0.92754 0.89121 0.91752 0.94519 0.90353 0.92556 0.77407 0.92308 0.93212 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.34 10.32 34.37 0.35 0.02 16 2 C -0.21 -3.24 14.13 -37.12 -0.52 -3.77 16 3 C -0.16 -2.71 12.91 -37.13 -0.48 -3.19 16 4 C 0.16 2.72 5.04 -6.61 -0.03 2.68 16 5 N -0.53 -10.87 5.13 -234.75 -1.21 -12.07 16 6 C 0.05 0.95 6.41 -2.84 -0.02 0.93 16 7 C -0.14 -3.41 5.37 -24.91 -0.13 -3.55 16 8 C 0.25 6.37 0.87 -89.64 -0.08 6.29 16 9 O -0.58 -15.46 13.16 -35.23 -0.46 -15.92 16 10 C -0.54 -14.45 8.27 -34.44 -0.28 -14.74 16 11 H 0.06 1.61 7.79 -52.48 -0.41 1.21 16 12 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 13 N -0.89 -24.00 10.74 55.43 0.60 -23.40 16 14 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.06 1.28 5.86 -2.29 -0.01 1.27 16 19 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.90 7.96 -51.93 -0.41 0.48 16 23 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.04 0.71 7.30 -51.93 -0.38 0.33 16 26 H 0.08 1.95 7.53 -51.93 -0.39 1.56 16 27 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 28 H 0.38 10.06 7.56 45.56 0.34 10.41 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.05 1.03 7.70 -51.93 -0.40 0.63 16 31 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 265.34 15.07 4.00 4.00 Total: -1.00 -28.76 265.34 -7.13 -35.89 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.73 Total: 8.15 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.30 Total: -12.24 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.61 Total: -35.47 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.46 Total: -15.92 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.76 -7.13 -35.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150787.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.140 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds