Wall clock time and date at job start Sun Mar 29 2020 21:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 162.18558 * 3 2 1 5 5 N 1.46901 * 109.47015 * 322.86907 * 4 3 2 6 6 C 1.47439 * 110.99961 * 69.87688 * 5 4 3 7 7 C 1.54322 * 107.23490 * 123.25626 * 6 5 4 8 8 C 1.55135 * 103.02006 * 22.28319 * 7 6 5 9 9 O 1.42894 * 110.99135 * 82.44025 * 8 7 6 10 10 C 1.50696 * 110.99057 * 206.22070 * 8 7 6 11 11 H 1.08004 * 120.00360 * 118.54663 * 10 8 7 12 12 C 1.37886 * 119.99979 * 298.54456 * 10 8 7 13 13 N 1.31506 * 119.99539 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99771 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47134 * 60.00151 * 14 12 10 16 16 H 1.48502 * 109.46703 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47409 * 299.99667 * 14 12 10 18 18 C 1.47853 * 110.99956 * 190.71742 * 5 4 3 19 19 H 1.08992 * 109.47387 * 294.94171 * 1 2 3 20 20 H 1.09004 * 109.47019 * 54.94831 * 1 2 3 21 21 H 1.09001 * 109.46457 * 174.94463 * 1 2 3 22 22 H 1.09002 * 109.47132 * 82.87190 * 4 3 2 23 23 H 1.09001 * 109.47213 * 202.87220 * 4 3 2 24 24 H 1.09003 * 109.89080 * 242.65955 * 6 5 4 25 25 H 1.08997 * 109.89286 * 3.84786 * 6 5 4 26 26 H 1.09003 * 110.70500 * 140.67082 * 7 6 5 27 27 H 1.09004 * 110.70538 * 263.72555 * 7 6 5 28 28 H 0.96695 * 114.00122 * 61.45498 * 9 8 7 29 29 H 0.97000 * 119.99610 * 180.02562 * 13 12 10 30 30 H 1.09002 * 110.36766 * 332.46788 * 18 5 4 31 31 H 1.08997 * 110.37443 * 94.80755 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 7 4.6087 -1.1020 0.8358 6 6 4.3394 -2.4054 0.2014 7 6 5.6928 -3.1333 0.0598 8 6 6.5742 -2.4448 1.1349 9 8 6.3416 -3.0103 2.4264 10 6 8.0337 -2.5248 0.7685 11 1 8.6001 -1.6197 0.6058 12 6 8.6462 -3.7536 0.6410 13 7 7.9564 -4.8556 0.8386 14 14 10.4556 -3.8527 0.1875 15 1 11.2635 -3.1545 1.2196 16 1 10.8702 -5.2767 0.1147 17 1 10.6715 -3.2056 -1.1315 18 6 6.0640 -0.9836 1.0689 19 1 -0.3634 0.4333 0.9317 20 1 -0.3633 0.5902 -0.8413 21 1 -0.3632 -1.0237 -0.0906 22 1 4.4813 -0.1254 -1.0200 23 1 4.4806 0.9490 0.3992 24 1 3.6672 -2.9911 0.8284 25 1 3.8950 -2.2543 -0.7823 26 1 5.5829 -4.1963 0.2744 27 1 6.1084 -2.9837 -0.9368 28 1 6.5557 -3.9513 2.4880 29 1 8.3873 -5.7200 0.7492 30 1 6.5385 -0.4528 0.2435 31 1 6.2569 -0.4714 2.0115 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150787.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:32 Heat of formation + Delta-G solvation = -21.057507 kcal Electronic energy + Delta-G solvation = -13676.253283 eV Core-core repulsion = 11343.931531 eV Total energy + Delta-G solvation = -2332.321753 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18013 -36.89144 -34.84451 -34.18718 -32.03984 -29.98387 -29.34824 -26.93743 -25.48095 -21.90647 -21.44682 -19.07898 -17.52709 -17.08475 -16.87625 -16.37014 -15.85210 -15.03898 -14.84144 -14.51686 -14.17722 -14.06011 -13.87224 -13.37532 -13.15440 -13.04593 -12.82450 -12.59356 -12.28795 -12.21916 -11.77392 -11.17441 -10.82617 -10.64207 -10.57992 -10.09406 -9.24628 -8.21465 -6.37880 1.42519 1.43923 1.51382 1.67338 1.79483 2.38957 3.02969 3.21984 3.44414 3.97544 4.02703 4.16999 4.38111 4.46689 4.53410 4.70912 4.80413 4.84794 4.86711 4.88549 5.03746 5.10409 5.23556 5.45362 5.52567 5.78048 5.91296 6.15552 6.20551 6.67903 6.74585 7.33664 7.44062 8.83998 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.067568 B = 0.007004 C = 0.006843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.296754 B = 3997.008394 C = 4090.989255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.191 4.191 3 C -0.212 4.212 4 C 0.160 3.840 5 N -0.535 5.535 6 C 0.057 3.943 7 C -0.135 4.135 8 C 0.234 3.766 9 O -0.589 6.589 10 C -0.563 4.563 11 H 0.059 0.941 12 C 0.031 3.969 13 N -0.912 5.912 14 Si 0.962 3.038 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.066 3.934 19 H 0.093 0.907 20 H 0.098 0.902 21 H 0.090 0.910 22 H 0.062 0.938 23 H 0.106 0.894 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.372 0.628 29 H 0.269 0.731 30 H 0.062 0.938 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 6.387 -3.652 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.193 4.193 3 C -0.213 4.213 4 C 0.033 3.967 5 N -0.260 5.260 6 C -0.071 4.071 7 C -0.174 4.174 8 C 0.194 3.806 9 O -0.396 6.396 10 C -0.601 4.601 11 H 0.077 0.923 12 C -0.170 4.170 13 N -0.551 5.551 14 Si 0.787 3.213 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.061 4.061 19 H 0.111 0.889 20 H 0.117 0.883 21 H 0.108 0.892 22 H 0.080 0.920 23 H 0.124 0.876 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.278 6.853 -3.052 11.932 hybrid contribution 1.684 -1.005 -1.036 2.218 sum -7.594 5.848 -4.088 10.420 Atomic orbital electron populations 1.19088 0.81755 1.04164 1.04391 1.23396 0.95169 0.99916 1.00800 1.22507 0.94016 1.02679 1.02096 1.19186 0.85047 0.96006 0.96447 1.63528 1.15273 1.01924 1.45254 1.22689 0.97348 0.90304 0.96747 1.23080 0.94621 1.00069 0.99635 1.19793 0.91845 0.88699 0.80286 1.86138 1.89778 1.29103 1.34617 1.21794 0.96320 0.93153 1.48874 0.92324 1.25714 1.02355 0.95189 0.93767 1.69826 1.37820 0.98039 1.49425 0.85563 0.79827 0.77098 0.78831 1.19915 1.20684 1.19555 1.22899 0.85639 0.97306 1.00281 0.88862 0.88316 0.89169 0.92000 0.87630 0.92418 0.92814 0.92345 0.93325 0.77983 0.92192 0.92031 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.67 10.32 70.18 0.72 0.05 16 2 C -0.19 -5.48 14.13 31.13 0.44 -5.04 16 3 C -0.21 -6.99 12.91 31.12 0.40 -6.59 16 4 C 0.16 5.31 5.04 84.50 0.43 5.74 16 5 N -0.54 -21.75 5.13 -896.60 -4.60 -26.36 16 6 C 0.06 2.36 6.41 86.65 0.56 2.91 16 7 C -0.13 -6.42 5.37 31.77 0.17 -6.25 16 8 C 0.23 11.89 0.87 -10.16 -0.01 11.88 16 9 O -0.59 -32.01 13.16 -148.98 -1.96 -33.97 16 10 C -0.56 -30.40 8.27 25.60 0.21 -30.19 16 11 H 0.06 3.10 7.79 -2.91 -0.02 3.08 16 12 C 0.03 1.62 5.29 84.66 0.45 2.07 16 13 N -0.91 -49.25 10.74 21.45 0.23 -49.02 16 14 Si 0.96 42.03 29.54 68.60 2.03 44.05 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 C 0.07 2.89 5.86 86.77 0.51 3.40 16 19 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 20 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.95 7.96 -2.39 -0.02 1.93 16 23 H 0.11 3.11 8.07 -2.39 -0.02 3.09 16 24 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.05 2.03 7.30 -2.39 -0.02 2.01 16 26 H 0.06 2.97 7.53 -2.39 -0.02 2.95 16 27 H 0.05 2.33 8.04 -2.38 -0.02 2.32 16 28 H 0.37 20.40 7.56 -74.06 -0.56 19.84 16 29 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.06 2.52 7.70 -2.39 -0.02 2.50 16 31 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -60.49 265.34 0.13 -60.36 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.56 Total: 26.95 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 3.88 Total: -22.02 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -4.37 Total: -75.37 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.96 Total: -33.97 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -60.49 0.13 -60.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150787.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.300 kcal (2) G-P(sol) polarization free energy of solvation -60.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds