Wall clock time and date at job start Sun Mar 29 2020 22:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00162 * 2 1 4 4 H 1.48497 * 109.46963 * 269.99701 * 3 2 1 5 5 H 1.48503 * 109.46914 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47266 * 149.99776 * 3 2 1 7 7 C 1.37877 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00178 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99825 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47142 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00008 * 180.02562 * 11 10 9 13 13 C 1.52994 * 115.55407 * 179.97438 * 12 11 10 14 14 C 1.53784 * 113.61233 * 34.33032 * 13 12 11 15 15 C 1.53787 * 87.07923 * 220.01769 * 14 13 12 16 16 C 1.53779 * 113.61529 * 296.83445 * 13 12 11 17 17 C 1.53007 * 117.51616 * 325.70199 * 12 11 10 18 18 C 1.53005 * 117.49517 * 34.32902 * 12 11 10 19 19 H 0.97000 * 119.99811 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47023 * 60.00485 * 9 7 2 21 21 H 1.09002 * 109.47306 * 300.00113 * 9 7 2 22 22 H 1.09002 * 109.46622 * 60.00415 * 10 9 7 23 23 H 1.09001 * 109.46988 * 299.99843 * 10 9 7 24 24 H 1.00897 * 111.00237 * 56.05123 * 11 10 9 25 25 H 1.09002 * 112.90771 * 165.58041 * 13 12 11 26 26 H 1.09004 * 113.61451 * 105.47254 * 14 13 12 27 27 H 1.08994 * 113.61477 * 334.56556 * 14 13 12 28 28 H 1.08997 * 113.61028 * 139.98291 * 15 14 13 29 29 H 1.09000 * 113.61529 * 270.88430 * 15 14 13 30 30 H 1.09006 * 113.61307 * 25.43275 * 16 13 12 31 31 H 1.09007 * 113.61642 * 254.53032 * 16 13 12 32 32 H 1.08994 * 117.49848 * 214.96612 * 17 12 11 33 33 H 1.08996 * 117.49566 * 359.97438 * 17 12 11 34 34 H 1.08998 * 117.49907 * 359.97438 * 18 12 11 35 35 H 1.09005 * 117.49871 * 145.00187 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0023 11 7 5.4905 -2.6366 0.0035 12 6 6.0170 -4.0081 0.0040 13 6 7.5421 -4.1295 0.0046 14 6 8.2482 -3.0182 0.7993 15 6 9.3003 -2.9933 -0.3220 16 6 8.2071 -3.5446 -1.2525 17 6 5.2231 -5.0697 0.7681 18 6 5.2244 -5.0693 -0.7620 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6801 0.8912 21 1 3.8752 -0.6805 -0.8888 22 1 3.6585 -3.1510 -0.8876 23 1 3.6578 -3.1499 0.8925 24 1 5.8514 -2.1102 0.7849 25 1 7.8877 -5.1325 0.2550 26 1 8.6416 -3.3509 1.7599 27 1 7.6678 -2.0987 0.8740 28 1 9.6331 -1.9895 -0.5861 29 1 10.1266 -3.6856 -0.1610 30 1 7.6155 -2.7689 -1.7387 31 1 8.5675 -4.3022 -1.9485 32 1 5.7874 -5.8546 1.2716 33 1 4.3103 -4.7505 1.2709 34 1 4.3122 -4.7499 -1.2659 35 1 5.7896 -5.8540 -1.2650 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593079891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:44 Heat of formation + Delta-G solvation = 38.769326 kcal Electronic energy + Delta-G solvation = -13864.111677 eV Core-core repulsion = 11670.217305 eV Total energy + Delta-G solvation = -2193.894372 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.68263 -36.82507 -33.77428 -32.04137 -29.15457 -26.25346 -25.52328 -23.84941 -22.17945 -20.58903 -19.98106 -18.66400 -16.71368 -16.08381 -15.62567 -14.65502 -14.43494 -14.01820 -13.35547 -13.10260 -12.57995 -12.46802 -12.18203 -12.00205 -11.53153 -11.33680 -11.06097 -10.85357 -10.66432 -10.46919 -10.24341 -9.85600 -9.73798 -9.69503 -9.64140 -9.21370 -8.53343 -7.71792 -6.04307 -4.02728 3.32954 3.39675 3.44307 3.94889 4.46278 4.48458 4.68039 4.75538 4.81632 4.99513 5.16660 5.21731 5.30215 5.44552 5.67660 5.72451 5.80846 5.93731 5.95515 5.99197 6.08453 6.11616 6.22417 6.31681 6.34677 6.44733 6.61791 6.80549 7.15058 7.38073 7.62053 7.76271 7.90757 8.53237 8.99642 9.58024 11.09038 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.007333 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.811017 B = 3817.449725 C = 4305.805517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.009 4.009 10 C 0.067 3.933 11 N -0.652 5.652 12 C 0.068 3.932 13 C -0.067 4.067 14 C -0.136 4.136 15 C -0.144 4.144 16 C -0.126 4.126 17 C -0.226 4.226 18 C -0.171 4.171 19 H 0.263 0.737 20 H 0.013 0.987 21 H 0.021 0.979 22 H 0.068 0.932 23 H 0.028 0.972 24 H 0.338 0.662 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.491 -7.569 0.471 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.061 4.061 11 N -0.282 5.282 12 C -0.025 4.025 13 C -0.086 4.086 14 C -0.173 4.173 15 C -0.181 4.181 16 C -0.163 4.163 17 C -0.266 4.266 18 C -0.209 4.209 19 H 0.073 0.927 20 H 0.031 0.969 21 H 0.039 0.961 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.158 0.842 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.380 -7.342 -0.211 17.951 hybrid contribution -0.019 0.516 0.918 1.053 sum 16.360 -6.826 0.707 17.741 Atomic orbital electron populations 1.69919 1.06317 1.26915 1.51122 1.25007 0.94732 0.99207 0.94471 0.86731 0.80269 0.83421 0.78566 1.20244 1.21490 1.19002 1.21055 0.89337 0.94511 1.51028 0.91138 1.19546 0.96714 0.91781 0.96683 1.22123 0.84062 1.00090 0.99833 1.60397 1.09738 1.09638 1.48428 1.21486 0.91963 0.86054 1.03015 1.21992 0.90445 0.98346 0.97845 1.22925 0.97659 0.99670 0.97076 1.22798 0.96657 1.01164 0.97499 1.22864 0.96947 1.00648 0.95861 1.23620 1.04270 1.03882 0.94842 1.23126 1.02733 1.00836 0.94200 0.92725 0.96916 0.96107 0.91351 0.95426 0.84184 0.89422 0.92060 0.89253 0.91575 0.90824 0.88774 0.92291 0.89498 0.88383 0.88124 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 10 C 0.07 1.36 4.74 -3.82 -0.02 1.34 16 11 N -0.65 -11.12 6.40 -99.96 -0.64 -11.76 16 12 C 0.07 0.98 2.57 -131.60 -0.34 0.64 16 13 C -0.07 -0.81 3.77 -89.81 -0.34 -1.15 16 14 C -0.14 -1.53 7.46 -25.91 -0.19 -1.73 16 15 C -0.14 -1.48 8.08 -25.92 -0.21 -1.69 16 16 C -0.13 -1.46 7.63 -25.92 -0.20 -1.66 16 17 C -0.23 -3.22 9.56 -26.72 -0.26 -3.47 16 18 C -0.17 -2.46 9.57 -26.73 -0.26 -2.71 16 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 20 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 21 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 22 H 0.07 1.44 6.20 -51.93 -0.32 1.11 16 23 H 0.03 0.57 6.21 -51.93 -0.32 0.25 16 24 H 0.34 5.51 6.91 -39.29 -0.27 5.24 16 25 H 0.09 0.96 8.13 -51.93 -0.42 0.54 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.11 6.15 -51.93 -0.32 0.79 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.55 6.21 -51.93 -0.32 1.23 16 34 H 0.10 1.60 6.21 -51.93 -0.32 1.28 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 275.44 15.07 4.15 4.15 Total: -1.00 -30.02 275.44 -8.35 -38.37 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.61 Total: 3.48 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.36 Total: -24.28 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.13 Total: -39.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.02 -8.35 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593079891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.140 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds