Wall clock time and date at job start Sun Mar 29 2020 22:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00162 * 2 1 4 4 H 1.48497 * 109.46963 * 269.99701 * 3 2 1 5 5 H 1.48503 * 109.46914 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47266 * 149.99776 * 3 2 1 7 7 C 1.37877 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00178 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99825 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47142 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00008 * 180.02562 * 11 10 9 13 13 C 1.52994 * 115.55407 * 179.97438 * 12 11 10 14 14 C 1.53784 * 113.61233 * 34.33032 * 13 12 11 15 15 C 1.53787 * 87.07923 * 220.01769 * 14 13 12 16 16 C 1.53779 * 113.61529 * 296.83445 * 13 12 11 17 17 C 1.53007 * 117.51616 * 325.70199 * 12 11 10 18 18 C 1.53005 * 117.49517 * 34.32902 * 12 11 10 19 19 H 0.97000 * 119.99811 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47023 * 60.00485 * 9 7 2 21 21 H 1.09002 * 109.47306 * 300.00113 * 9 7 2 22 22 H 1.09002 * 109.46622 * 60.00415 * 10 9 7 23 23 H 1.09001 * 109.46988 * 299.99843 * 10 9 7 24 24 H 1.00897 * 111.00237 * 56.05123 * 11 10 9 25 25 H 1.09002 * 112.90771 * 165.58041 * 13 12 11 26 26 H 1.09004 * 113.61451 * 105.47254 * 14 13 12 27 27 H 1.08994 * 113.61477 * 334.56556 * 14 13 12 28 28 H 1.08997 * 113.61028 * 139.98291 * 15 14 13 29 29 H 1.09000 * 113.61529 * 270.88430 * 15 14 13 30 30 H 1.09006 * 113.61307 * 25.43275 * 16 13 12 31 31 H 1.09007 * 113.61642 * 254.53032 * 16 13 12 32 32 H 1.08994 * 117.49848 * 214.96612 * 17 12 11 33 33 H 1.08996 * 117.49566 * 359.97438 * 17 12 11 34 34 H 1.08998 * 117.49907 * 359.97438 * 18 12 11 35 35 H 1.09005 * 117.49871 * 145.00187 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0023 11 7 5.4905 -2.6366 0.0035 12 6 6.0170 -4.0081 0.0040 13 6 7.5421 -4.1295 0.0046 14 6 8.2482 -3.0182 0.7993 15 6 9.3003 -2.9933 -0.3220 16 6 8.2071 -3.5446 -1.2525 17 6 5.2231 -5.0697 0.7681 18 6 5.2244 -5.0693 -0.7620 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6801 0.8912 21 1 3.8752 -0.6805 -0.8888 22 1 3.6585 -3.1510 -0.8876 23 1 3.6578 -3.1499 0.8925 24 1 5.8514 -2.1102 0.7849 25 1 7.8877 -5.1325 0.2550 26 1 8.6416 -3.3509 1.7599 27 1 7.6678 -2.0987 0.8740 28 1 9.6331 -1.9895 -0.5861 29 1 10.1266 -3.6856 -0.1610 30 1 7.6155 -2.7689 -1.7387 31 1 8.5675 -4.3022 -1.9485 32 1 5.7874 -5.8546 1.2716 33 1 4.3103 -4.7505 1.2709 34 1 4.3122 -4.7499 -1.2659 35 1 5.7896 -5.8540 -1.2650 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593079891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:44 Heat of formation + Delta-G solvation = 20.053406 kcal Electronic energy + Delta-G solvation = -13864.923260 eV Core-core repulsion = 11670.217305 eV Total energy + Delta-G solvation = -2194.705955 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76051 -37.94007 -35.63494 -33.94638 -30.95564 -27.43726 -26.40596 -25.57947 -23.32766 -22.37542 -21.08324 -19.80130 -18.85475 -17.33627 -16.67255 -16.26334 -15.94005 -15.58342 -14.87854 -14.51045 -14.35756 -13.52290 -13.37788 -13.18194 -13.15711 -12.86511 -12.50021 -12.24398 -11.96861 -11.82102 -11.61541 -11.48820 -11.41200 -11.25863 -10.89842 -10.78140 -10.67648 -9.08661 -8.32364 -6.37386 1.35772 1.36887 1.49638 2.34690 2.81296 3.03093 3.19012 3.70182 3.79015 3.85030 4.06924 4.10721 4.23162 4.33242 4.37957 4.53062 4.76025 4.82030 4.84280 4.93298 5.01176 5.05478 5.11937 5.16525 5.21553 5.23053 5.27317 5.44050 5.46147 5.59949 5.74552 6.14709 6.23326 6.50494 6.71029 7.27592 8.84405 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039830 B = 0.007333 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.811017 B = 3817.449725 C = 4305.805517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.003 4.003 10 C 0.083 3.917 11 N -0.651 5.651 12 C 0.062 3.938 13 C -0.064 4.064 14 C -0.138 4.138 15 C -0.133 4.133 16 C -0.129 4.129 17 C -0.223 4.223 18 C -0.176 4.176 19 H 0.267 0.733 20 H 0.019 0.981 21 H 0.021 0.979 22 H 0.056 0.944 23 H 0.020 0.980 24 H 0.344 0.656 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.376 -7.455 0.739 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.041 4.041 10 C -0.046 4.046 11 N -0.282 5.282 12 C -0.030 4.030 13 C -0.083 4.083 14 C -0.176 4.176 15 C -0.171 4.171 16 C -0.166 4.166 17 C -0.262 4.262 18 C -0.213 4.213 19 H 0.076 0.924 20 H 0.038 0.962 21 H 0.039 0.961 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.165 0.835 25 H 0.126 0.874 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.283 -7.246 0.060 20.599 hybrid contribution -0.982 0.385 0.825 1.339 sum 18.301 -6.861 0.885 19.565 Atomic orbital electron populations 1.70068 1.08312 1.28287 1.52403 1.26010 0.95641 1.03584 0.93879 0.85585 0.79420 0.77960 0.79208 1.19275 1.20783 1.16993 1.21377 0.91876 0.93187 1.50897 0.95180 1.19423 0.93616 0.94305 0.96728 1.21743 0.86454 0.97394 0.98990 1.60285 1.07193 1.11822 1.48895 1.21713 0.93684 0.84462 1.03148 1.22093 0.88112 0.99701 0.98392 1.22927 0.97819 0.98748 0.98115 1.22781 0.96556 1.01662 0.96079 1.22827 0.97279 1.00424 0.96107 1.23612 1.03531 1.04364 0.94729 1.23166 1.02179 1.01597 0.94388 0.92375 0.96225 0.96058 0.92534 0.96209 0.83517 0.87378 0.90715 0.90704 0.91531 0.88842 0.91138 0.91037 0.86965 0.90628 0.90486 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.01 0.35 5.47 84.65 0.46 0.81 16 3 Si 0.96 45.25 27.47 68.60 1.88 47.14 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.53 -31.78 9.66 25.60 0.25 -31.53 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 10 C 0.08 3.43 4.74 86.31 0.41 3.84 16 11 N -0.65 -21.70 6.40 -470.16 -3.01 -24.71 16 12 C 0.06 1.71 2.57 3.53 0.01 1.72 16 13 C -0.06 -1.36 3.77 -10.27 -0.04 -1.40 16 14 C -0.14 -2.74 7.46 31.12 0.23 -2.51 16 15 C -0.13 -2.31 8.08 31.12 0.25 -2.06 16 16 C -0.13 -2.67 7.63 31.12 0.24 -2.44 16 17 C -0.22 -6.03 9.56 30.60 0.29 -5.74 16 18 C -0.18 -4.86 9.57 30.60 0.29 -4.56 16 19 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 20 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 21 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 22 H 0.06 2.46 6.20 -2.39 -0.01 2.44 16 23 H 0.02 0.84 6.21 -2.39 -0.01 0.83 16 24 H 0.34 10.80 6.91 -89.70 -0.62 10.18 16 25 H 0.11 1.90 8.13 -2.39 -0.02 1.88 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.70 6.15 -2.39 -0.01 1.69 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.81 8.10 -2.38 -0.02 1.79 16 31 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.11 2.46 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.40 6.21 -2.39 -0.01 2.39 16 34 H 0.08 2.50 6.21 -2.39 -0.01 2.48 16 35 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -65.35 275.44 2.09 -63.26 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.39 Total: 18.51 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 2.52 Total: -43.88 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.71 Total: -85.03 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -65.35 2.09 -63.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593079891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.314 kcal (2) G-P(sol) polarization free energy of solvation -65.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds