Wall clock time and date at job start Sun Mar 29 2020 21:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.53002 * 109.47181 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47215 * 180.02562 * 4 3 2 6 6 C 1.35309 * 125.87027 * 124.97307 * 5 4 3 7 7 C 1.35353 * 106.17498 * 179.97438 * 6 5 4 8 8 C 1.50706 * 126.75076 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46793 * 124.99895 * 8 7 6 10 10 H 1.08001 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99507 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99719 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00155 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46700 * 90.00271 * 13 11 9 15 15 H 1.48501 * 109.46990 * 209.99805 * 13 11 9 16 16 H 1.48495 * 109.47253 * 330.00154 * 13 11 9 17 17 N 1.33775 * 106.49785 * 359.97438 * 7 6 5 18 18 N 1.28637 * 108.88137 * 0.02562 * 17 7 6 19 19 H 1.09007 * 109.46928 * 60.00195 * 1 2 3 20 20 H 1.09006 * 109.47128 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47254 * 300.00146 * 1 2 3 22 22 H 1.08997 * 109.46834 * 239.99681 * 2 1 3 23 23 H 1.09004 * 109.46658 * 120.00254 * 2 1 3 24 24 H 1.09001 * 109.46985 * 59.99547 * 3 2 1 25 25 H 1.09007 * 109.47030 * 299.99742 * 3 2 1 26 26 H 1.08997 * 109.46834 * 59.99681 * 4 3 2 27 27 H 1.09007 * 109.46928 * 299.99805 * 4 3 2 28 28 H 1.08002 * 126.91313 * 0.02562 * 6 5 4 29 29 H 1.08997 * 109.46870 * 244.99788 * 8 7 6 30 30 H 1.09004 * 109.46999 * 5.00398 * 8 7 6 31 31 H 0.96992 * 119.99928 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.9156 3.3611 0.8984 7 6 5.0942 4.6498 0.5250 8 6 5.9631 5.6744 1.2080 9 6 6.9352 6.2526 0.2121 10 1 6.9246 5.9124 -0.8129 11 6 7.8381 7.2158 0.6096 12 7 8.6862 7.7208 -0.2595 13 14 7.8559 7.8045 2.3823 14 1 8.7856 6.9602 3.1749 15 1 8.3084 9.2181 2.4299 16 1 6.4880 7.7032 2.9513 17 7 4.3477 4.8350 -0.5696 18 7 3.7464 3.7342 -0.8546 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6767 1.9563 -0.8901 26 1 3.9329 0.9287 -0.8908 27 1 3.9337 0.9285 0.8892 28 1 5.3672 2.8620 1.7430 29 1 5.3374 6.4714 1.6098 30 1 6.5140 5.2002 2.0202 31 1 9.3216 8.3981 0.0202 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594648847.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:54 Heat of formation + Delta-G solvation = 77.327499 kcal Electronic energy + Delta-G solvation = -13110.889552 eV Core-core repulsion = 10815.126845 eV Total energy + Delta-G solvation = -2295.762708 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.54813 -36.45178 -33.86406 -32.87273 -31.24773 -29.36117 -27.83384 -24.63823 -23.08551 -21.58398 -21.16332 -19.83878 -16.79198 -16.66128 -16.13399 -15.43912 -14.36672 -14.14263 -13.89845 -13.64605 -13.07773 -12.89669 -12.21872 -12.08877 -11.78523 -11.64741 -11.42572 -11.09360 -10.89969 -10.61733 -10.50535 -10.08151 -9.82537 -9.36454 -9.29521 -8.51694 -8.23097 -5.97685 -3.95563 2.20167 2.78762 3.32976 3.41084 3.42380 3.45030 4.38630 4.48327 4.53760 4.72944 4.82173 5.06884 5.12573 5.21614 5.34733 5.42552 5.46642 5.59395 5.72351 5.83057 5.89138 5.97192 6.02017 6.27640 6.89176 7.12335 7.15548 7.24394 7.75599 8.60305 9.10542 9.27920 9.61430 11.15946 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.080114 B = 0.005612 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.417924 B = 4987.888035 C = 5132.703271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.120 3.880 5 N -0.303 5.303 6 C -0.081 4.081 7 C 0.037 3.963 8 C 0.060 3.940 9 C -0.506 4.506 10 H 0.076 0.924 11 C 0.067 3.933 12 N -0.901 5.901 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.264 1.264 17 N -0.257 5.257 18 N -0.105 5.105 19 H 0.056 0.944 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.182 0.818 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -16.141 4.790 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.002 4.002 5 N -0.098 5.098 6 C -0.230 4.230 7 C -0.101 4.101 8 C 0.021 3.979 9 C -0.545 4.545 10 H 0.094 0.906 11 C -0.134 4.134 12 N -0.540 5.540 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.189 1.189 17 N -0.123 5.123 18 N -0.084 5.084 19 H 0.075 0.925 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.199 0.801 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.021 -15.697 3.502 20.693 hybrid contribution 0.830 -0.088 1.839 2.020 sum -12.191 -15.785 5.340 20.647 Atomic orbital electron populations 1.21753 0.95332 1.01704 1.02194 1.21451 0.96469 0.95585 1.02364 1.21919 0.92964 0.98032 1.04253 1.21972 0.95952 0.77668 1.04560 1.47220 1.31656 1.11361 1.19610 1.23338 1.02446 0.96454 1.00801 1.22497 0.98891 0.94369 0.94314 1.18144 0.92926 0.91498 0.95376 1.20934 1.14858 1.21463 0.97223 0.90595 1.24981 0.95184 0.95896 0.97320 1.69905 1.20835 1.28934 1.34359 0.86821 0.78838 0.78265 0.85654 1.20239 1.21234 1.18899 1.75098 1.08812 1.14808 1.13630 1.78182 1.21753 0.93359 1.15115 0.92453 0.92574 0.92641 0.91502 0.91707 0.91149 0.89988 0.88963 0.88298 0.80132 0.94471 0.95159 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.13 -1.26 5.34 -26.73 -0.14 -1.41 16 4 C 0.12 1.26 6.46 -4.04 -0.03 1.24 16 5 N -0.30 -5.03 3.44 -61.26 -0.21 -5.24 16 6 C -0.08 -1.46 11.49 -17.05 -0.20 -1.65 16 7 C 0.04 0.84 6.44 -82.77 -0.53 0.31 16 8 C 0.06 1.48 4.62 -29.03 -0.13 1.34 16 9 C -0.51 -15.03 9.64 -34.44 -0.33 -15.36 16 10 H 0.08 2.52 7.98 -52.49 -0.42 2.10 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -28.39 13.96 55.43 0.77 -27.61 16 13 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 17 N -0.26 -6.24 12.40 33.29 0.41 -5.82 16 18 N -0.11 -2.18 12.92 60.35 0.78 -1.40 16 19 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 20 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 21 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 0.76 8.07 -51.93 -0.42 0.34 16 28 H 0.18 2.46 8.06 -52.49 -0.42 2.03 16 29 H 0.04 0.93 7.20 -51.93 -0.37 0.55 16 30 H 0.03 0.69 7.55 -51.93 -0.39 0.29 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 268.52 15.07 4.05 4.05 Total: -1.00 -34.63 268.52 -4.69 -39.32 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.57 Total: -4.85 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.25 Total: -15.29 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 1.76 Total: -40.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.63 -4.69 -39.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594648847.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.647 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds