Wall clock time and date at job start Sun Mar 29 2020 21:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.53002 * 109.47181 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47215 * 180.02562 * 4 3 2 6 6 C 1.35309 * 125.87027 * 124.97307 * 5 4 3 7 7 C 1.35353 * 106.17498 * 179.97438 * 6 5 4 8 8 C 1.50706 * 126.75076 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46793 * 124.99895 * 8 7 6 10 10 H 1.08001 * 119.99975 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99507 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99719 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00155 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46700 * 90.00271 * 13 11 9 15 15 H 1.48501 * 109.46990 * 209.99805 * 13 11 9 16 16 H 1.48495 * 109.47253 * 330.00154 * 13 11 9 17 17 N 1.33775 * 106.49785 * 359.97438 * 7 6 5 18 18 N 1.28637 * 108.88137 * 0.02562 * 17 7 6 19 19 H 1.09007 * 109.46928 * 60.00195 * 1 2 3 20 20 H 1.09006 * 109.47128 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47254 * 300.00146 * 1 2 3 22 22 H 1.08997 * 109.46834 * 239.99681 * 2 1 3 23 23 H 1.09004 * 109.46658 * 120.00254 * 2 1 3 24 24 H 1.09001 * 109.46985 * 59.99547 * 3 2 1 25 25 H 1.09007 * 109.47030 * 299.99742 * 3 2 1 26 26 H 1.08997 * 109.46834 * 59.99681 * 4 3 2 27 27 H 1.09007 * 109.46928 * 299.99805 * 4 3 2 28 28 H 1.08002 * 126.91313 * 0.02562 * 6 5 4 29 29 H 1.08997 * 109.46870 * 244.99788 * 8 7 6 30 30 H 1.09004 * 109.46999 * 5.00398 * 8 7 6 31 31 H 0.96992 * 119.99928 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.9156 3.3611 0.8984 7 6 5.0942 4.6498 0.5250 8 6 5.9631 5.6744 1.2080 9 6 6.9352 6.2526 0.2121 10 1 6.9246 5.9124 -0.8129 11 6 7.8381 7.2158 0.6096 12 7 8.6862 7.7208 -0.2595 13 14 7.8559 7.8045 2.3823 14 1 8.7856 6.9602 3.1749 15 1 8.3084 9.2181 2.4299 16 1 6.4880 7.7032 2.9513 17 7 4.3477 4.8350 -0.5696 18 7 3.7464 3.7342 -0.8546 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6767 1.9563 -0.8901 26 1 3.9329 0.9287 -0.8908 27 1 3.9337 0.9285 0.8892 28 1 5.3672 2.8620 1.7430 29 1 5.3374 6.4714 1.6098 30 1 6.5140 5.2002 2.0202 31 1 9.3216 8.3981 0.0202 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594648847.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:54 Heat of formation + Delta-G solvation = 52.830169 kcal Electronic energy + Delta-G solvation = -13111.951836 eV Core-core repulsion = 10815.126845 eV Total energy + Delta-G solvation = -2296.824992 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.04414 -37.36284 -35.52688 -34.39116 -33.10012 -30.44610 -29.54481 -25.62891 -25.03724 -22.62835 -22.28886 -21.30675 -18.90659 -18.02088 -17.30486 -16.38154 -16.26448 -15.59382 -15.08888 -14.73221 -14.36985 -14.03325 -13.98674 -13.50992 -12.95056 -12.70056 -12.43303 -12.30787 -12.22913 -11.96633 -11.88178 -11.62868 -11.53349 -11.39953 -10.81000 -10.72666 -9.86617 -8.23912 -6.29486 0.77887 1.41467 1.46351 1.57918 1.62990 1.75836 2.41894 3.10218 3.54087 3.70791 3.84528 4.08903 4.18872 4.30998 4.36768 4.42514 4.56621 4.68553 4.84327 4.90980 5.00572 5.08312 5.22952 5.29810 5.37407 5.37835 5.44157 5.63295 5.87727 6.32919 6.75806 7.32340 7.71972 8.94132 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.080114 B = 0.005612 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.417924 B = 4987.888035 C = 5132.703271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.127 4.127 4 C 0.106 3.894 5 N -0.286 5.286 6 C -0.048 4.048 7 C -0.012 4.012 8 C 0.067 3.933 9 C -0.520 4.520 10 H 0.016 0.984 11 C 0.001 3.999 12 N -0.956 5.956 13 Si 0.962 3.038 14 H -0.254 1.254 15 H -0.287 1.287 16 H -0.242 1.242 17 N -0.315 5.315 18 N -0.125 5.125 19 H 0.047 0.953 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.142 0.858 28 H 0.234 0.766 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -18.444 7.794 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.166 4.166 4 C -0.012 4.012 5 N -0.081 5.081 6 C -0.199 4.199 7 C -0.151 4.151 8 C 0.028 3.972 9 C -0.559 4.559 10 H 0.034 0.966 11 C -0.195 4.195 12 N -0.597 5.597 13 Si 0.783 3.217 14 H -0.178 1.178 15 H -0.213 1.213 16 H -0.166 1.166 17 N -0.181 5.181 18 N -0.103 5.103 19 H 0.066 0.934 20 H 0.087 0.913 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.160 0.840 28 H 0.250 0.750 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.578 -18.045 6.477 23.494 hybrid contribution 0.940 0.488 0.787 1.320 sum -12.638 -17.557 7.265 22.820 Atomic orbital electron populations 1.21780 0.95488 1.02368 1.01643 1.21425 0.96270 0.93678 1.03739 1.21868 0.92292 0.99665 1.02772 1.22621 0.96567 0.74603 1.07449 1.47727 1.29974 1.12639 1.17765 1.23896 1.00496 0.94567 1.00938 1.22469 1.00686 0.96509 0.95426 1.17973 0.92175 0.92201 0.94857 1.21150 1.16600 1.22199 0.95908 0.96568 1.26111 0.94243 0.95699 1.03450 1.70095 1.22084 1.29970 1.37543 0.85506 0.80328 0.77563 0.78291 1.17843 1.21305 1.16551 1.75011 1.10633 1.17155 1.15338 1.78058 1.22282 0.93556 1.16440 0.93416 0.91289 0.92888 0.90684 0.89709 0.91821 0.92416 0.87511 0.83974 0.74986 0.94839 0.92043 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.11 -1.20 5.93 30.59 0.18 -1.01 16 3 C -0.13 -2.13 5.34 30.59 0.16 -1.96 16 4 C 0.11 1.85 6.46 86.38 0.56 2.41 16 5 N -0.29 -8.86 3.44 -347.73 -1.20 -10.05 16 6 C -0.05 -1.58 11.49 83.49 0.96 -0.62 16 7 C -0.01 -0.55 6.44 41.60 0.27 -0.28 16 8 C 0.07 3.27 4.62 29.10 0.13 3.40 16 9 C -0.52 -31.90 9.64 25.60 0.25 -31.65 16 10 H 0.02 1.13 7.98 -2.91 -0.02 1.11 16 11 C 0.00 0.05 5.47 84.65 0.46 0.52 16 12 N -0.96 -62.27 13.96 21.45 0.30 -61.98 16 13 Si 0.96 43.94 27.47 68.60 1.88 45.82 16 14 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 17 N -0.32 -15.79 12.40 -48.59 -0.60 -16.40 16 18 N -0.12 -5.18 12.92 37.02 0.48 -4.70 16 19 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 20 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 21 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.25 8.12 -2.38 -0.02 1.23 16 26 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.14 1.33 8.07 -2.38 -0.02 1.31 16 28 H 0.23 4.93 8.06 -2.91 -0.02 4.90 16 29 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 30 H 0.06 2.59 7.55 -2.39 -0.02 2.57 16 31 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -81.09 268.52 5.59 -75.50 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.04 Total: 2.08 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 3.69 Total: -30.27 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -1.02 Total: -93.13 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -81.09 5.59 -75.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594648847.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.330 kcal (2) G-P(sol) polarization free energy of solvation -81.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds