Wall clock time and date at job start Sun Mar 29 2020 22:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47579 * 240.00116 * 3 2 1 5 5 H 1.48501 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47020 * 120.00472 * 3 2 1 7 7 C 1.38814 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00356 * 157.94291 * 7 2 1 9 9 N 1.36946 * 119.99735 * 337.94693 * 7 2 1 10 10 C 1.46498 * 119.99890 * 324.91835 * 9 7 2 11 11 C 1.53002 * 109.47370 * 270.00371 * 10 9 7 12 12 C 1.53002 * 109.47246 * 180.02562 * 11 10 9 13 13 C 1.53772 * 113.61142 * 184.99712 * 12 11 10 14 14 C 1.53777 * 87.17511 * 220.06060 * 13 12 11 15 15 C 1.53779 * 87.07930 * 25.39239 * 14 13 12 16 16 C 1.46497 * 120.00082 * 144.91727 * 9 7 2 17 17 C 1.53000 * 117.49705 * 3.24083 * 16 9 7 18 18 C 1.52995 * 117.50097 * 294.58173 * 16 9 7 19 19 H 0.97001 * 120.00346 * 355.75582 * 1 2 3 20 20 H 1.08997 * 109.47304 * 150.00160 * 10 9 7 21 21 H 1.09005 * 109.46816 * 30.00099 * 10 9 7 22 22 H 1.08997 * 109.47080 * 59.99651 * 11 10 9 23 23 H 1.09000 * 109.46777 * 300.00111 * 11 10 9 24 24 H 1.08994 * 112.90448 * 316.24778 * 12 11 10 25 25 H 1.09003 * 113.61862 * 105.46964 * 13 12 11 26 26 H 1.09007 * 113.62111 * 334.65003 * 13 12 11 27 27 H 1.09001 * 113.61841 * 139.93847 * 14 13 12 28 28 H 1.09007 * 113.61577 * 270.84474 * 14 13 12 29 29 H 1.09001 * 113.61506 * 89.11749 * 15 14 13 30 30 H 1.09003 * 113.61784 * 219.94110 * 15 14 13 31 31 H 1.09001 * 115.54934 * 148.90428 * 16 9 7 32 32 H 1.09001 * 117.50005 * 359.97438 * 17 16 9 33 33 H 1.08997 * 117.49968 * 145.01856 * 17 16 9 34 34 H 1.09002 * 117.49621 * 214.98407 * 18 16 9 35 35 H 1.09000 * 117.49904 * 359.97151 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0310 -1.2362 -0.3518 9 7 1.4007 -2.3449 0.4443 10 6 0.4455 -2.2816 1.5532 11 6 1.1885 -2.4679 2.8777 12 6 0.1908 -2.4023 4.0358 13 6 0.8526 -2.4571 5.4227 14 6 -0.3086 -3.3671 5.8568 15 6 -0.4503 -3.7599 4.3768 16 6 1.7038 -3.6308 -0.1889 17 6 2.7655 -3.6429 -1.2905 18 6 1.2874 -3.8146 -1.6495 19 1 -0.4851 0.8377 0.0622 20 1 -0.2969 -3.0714 1.4389 21 1 -0.0521 -1.3117 1.5491 22 1 1.9309 -1.6781 2.9920 23 1 1.6862 -3.4376 2.8817 24 1 -0.5314 -1.5931 3.9282 25 1 0.8698 -1.4961 5.9367 26 1 1.8221 -2.9555 5.4247 27 1 -0.0004 -4.1916 6.4997 28 1 -1.1677 -2.8221 6.2481 29 1 0.1628 -4.6147 4.0912 30 1 -1.4850 -3.8518 4.0465 31 1 1.6464 -4.5015 0.4643 32 1 3.2381 -2.6941 -1.5445 33 1 3.4061 -4.5218 -1.3624 34 1 0.9562 -4.8064 -1.9574 35 1 0.7875 -2.9790 -2.1393 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595300385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:46 Heat of formation + Delta-G solvation = 52.930107 kcal Electronic energy + Delta-G solvation = -14108.962019 eV Core-core repulsion = 11915.681705 eV Total energy + Delta-G solvation = -2193.280314 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.51940 -36.85369 -33.62784 -31.31323 -28.94702 -25.35986 -24.94543 -23.29020 -21.38504 -20.79109 -19.55898 -18.96083 -16.20190 -15.36901 -15.18648 -14.67885 -14.08155 -13.87304 -13.04274 -12.61743 -12.32158 -12.11654 -11.70910 -11.42590 -11.20700 -10.86942 -10.67910 -10.63983 -10.23292 -10.20366 -10.03598 -9.88271 -9.62403 -9.49469 -9.28190 -9.12859 -8.40018 -6.49647 -5.71985 -3.32870 3.38279 3.44226 3.46593 4.48994 4.97835 4.99903 5.02738 5.11323 5.24737 5.36915 5.44327 5.87686 5.95822 5.99974 6.06211 6.13727 6.16779 6.24779 6.26275 6.35977 6.43238 6.53938 6.64172 6.66452 6.75760 6.93902 7.03683 7.10945 7.26773 7.34346 7.79403 7.86611 8.53589 9.22072 9.85781 10.41684 11.22544 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023301 B = 0.010947 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.366730 B = 2557.163115 C = 3388.530038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.010 3.990 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.554 5.554 10 C 0.147 3.853 11 C -0.122 4.122 12 C -0.103 4.103 13 C -0.139 4.139 14 C -0.144 4.144 15 C -0.136 4.136 16 C 0.123 3.877 17 C -0.198 4.198 18 C -0.224 4.224 19 H 0.254 0.746 20 H 0.022 0.978 21 H 0.098 0.902 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -5.763 7.077 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.271 5.271 10 C 0.022 3.978 11 C -0.162 4.162 12 C -0.122 4.122 13 C -0.177 4.177 14 C -0.182 4.182 15 C -0.173 4.173 16 C 0.013 3.987 17 C -0.236 4.236 18 C -0.265 4.265 19 H 0.064 0.936 20 H 0.041 0.959 21 H 0.116 0.884 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.182 -5.591 7.035 8.988 hybrid contribution 0.445 0.853 -0.095 0.967 sum 0.627 -4.738 6.939 8.426 Atomic orbital electron populations 1.70047 1.05477 1.25991 1.51193 1.25096 0.94958 0.98627 1.00361 0.86497 0.79258 0.83551 0.78296 1.20761 1.21617 1.20890 1.19040 0.94287 0.85660 1.39479 0.91835 1.43478 1.49118 1.01220 1.33254 1.20977 0.90429 1.02680 0.83733 1.22103 0.97970 1.00328 0.95784 1.22522 0.98303 0.97128 0.94258 1.22947 0.97750 0.99352 0.97638 1.22817 0.98974 0.99501 0.96877 1.22979 1.00781 0.98094 0.95480 1.21203 1.00127 0.90397 0.86925 1.23025 0.91903 1.01737 1.06964 1.23368 0.97350 1.00515 1.05282 0.93615 0.95920 0.88421 0.92327 0.93954 0.89612 0.92209 0.90575 0.92264 0.90721 0.90567 0.92012 0.89738 0.88560 0.90870 0.91342 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 11.33 55.49 0.63 -24.77 16 2 C 0.01 0.26 4.96 -17.43 -0.09 0.18 16 3 Si 0.89 21.64 29.61 -169.99 -5.03 16.60 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.26 -6.96 8.63 -15.05 -0.13 -7.09 16 8 H 0.06 1.74 6.55 -52.49 -0.34 1.39 16 9 N -0.55 -13.95 2.78 -165.66 -0.46 -14.41 16 10 C 0.15 3.46 5.33 -4.04 -0.02 3.44 16 11 C -0.12 -2.43 5.38 -26.73 -0.14 -2.58 16 12 C -0.10 -1.72 3.66 -89.72 -0.33 -2.05 16 13 C -0.14 -1.99 7.64 -25.93 -0.20 -2.19 16 14 C -0.14 -1.84 8.08 -25.92 -0.21 -2.05 16 15 C -0.14 -1.97 7.64 -25.83 -0.20 -2.16 16 16 C 0.12 2.72 6.56 -67.93 -0.45 2.27 16 17 C -0.20 -4.05 9.80 -26.69 -0.26 -4.31 16 18 C -0.22 -4.74 10.36 -26.70 -0.28 -5.02 16 19 H 0.25 7.05 8.32 -40.82 -0.34 6.71 16 20 H 0.02 0.51 8.07 -51.93 -0.42 0.09 16 21 H 0.10 2.59 5.36 -51.93 -0.28 2.31 16 22 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 23 H 0.04 0.81 7.84 -51.93 -0.41 0.41 16 24 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.09 7.90 -51.93 -0.41 0.68 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.10 2.14 6.37 -51.93 -0.33 1.81 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 282.99 15.07 4.26 4.26 Total: -1.00 -28.10 282.99 -8.87 -36.97 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.97 Total: 2.89 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -2.30 Total: -21.55 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.17 Total: -39.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.10 -8.87 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595300385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.900 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds