Wall clock time and date at job start Sun Mar 29 2020 22:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47579 * 240.00116 * 3 2 1 5 5 H 1.48501 * 109.47215 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47020 * 120.00472 * 3 2 1 7 7 C 1.38814 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00356 * 157.94291 * 7 2 1 9 9 N 1.36946 * 119.99735 * 337.94693 * 7 2 1 10 10 C 1.46498 * 119.99890 * 324.91835 * 9 7 2 11 11 C 1.53002 * 109.47370 * 270.00371 * 10 9 7 12 12 C 1.53002 * 109.47246 * 180.02562 * 11 10 9 13 13 C 1.53772 * 113.61142 * 184.99712 * 12 11 10 14 14 C 1.53777 * 87.17511 * 220.06060 * 13 12 11 15 15 C 1.53779 * 87.07930 * 25.39239 * 14 13 12 16 16 C 1.46497 * 120.00082 * 144.91727 * 9 7 2 17 17 C 1.53000 * 117.49705 * 3.24083 * 16 9 7 18 18 C 1.52995 * 117.50097 * 294.58173 * 16 9 7 19 19 H 0.97001 * 120.00346 * 355.75582 * 1 2 3 20 20 H 1.08997 * 109.47304 * 150.00160 * 10 9 7 21 21 H 1.09005 * 109.46816 * 30.00099 * 10 9 7 22 22 H 1.08997 * 109.47080 * 59.99651 * 11 10 9 23 23 H 1.09000 * 109.46777 * 300.00111 * 11 10 9 24 24 H 1.08994 * 112.90448 * 316.24778 * 12 11 10 25 25 H 1.09003 * 113.61862 * 105.46964 * 13 12 11 26 26 H 1.09007 * 113.62111 * 334.65003 * 13 12 11 27 27 H 1.09001 * 113.61841 * 139.93847 * 14 13 12 28 28 H 1.09007 * 113.61577 * 270.84474 * 14 13 12 29 29 H 1.09001 * 113.61506 * 89.11749 * 15 14 13 30 30 H 1.09003 * 113.61784 * 219.94110 * 15 14 13 31 31 H 1.09001 * 115.54934 * 148.90428 * 16 9 7 32 32 H 1.09001 * 117.50005 * 359.97438 * 17 16 9 33 33 H 1.08997 * 117.49968 * 145.01856 * 17 16 9 34 34 H 1.09002 * 117.49621 * 214.98407 * 18 16 9 35 35 H 1.09000 * 117.49904 * 359.97151 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0310 -1.2362 -0.3518 9 7 1.4007 -2.3449 0.4443 10 6 0.4455 -2.2816 1.5532 11 6 1.1885 -2.4679 2.8777 12 6 0.1908 -2.4023 4.0358 13 6 0.8526 -2.4571 5.4227 14 6 -0.3086 -3.3671 5.8568 15 6 -0.4503 -3.7599 4.3768 16 6 1.7038 -3.6308 -0.1889 17 6 2.7655 -3.6429 -1.2905 18 6 1.2874 -3.8146 -1.6495 19 1 -0.4851 0.8377 0.0622 20 1 -0.2969 -3.0714 1.4389 21 1 -0.0521 -1.3117 1.5491 22 1 1.9309 -1.6781 2.9920 23 1 1.6862 -3.4376 2.8817 24 1 -0.5314 -1.5931 3.9282 25 1 0.8698 -1.4961 5.9367 26 1 1.8221 -2.9555 5.4247 27 1 -0.0004 -4.1916 6.4997 28 1 -1.1677 -2.8221 6.2481 29 1 0.1628 -4.6147 4.0912 30 1 -1.4850 -3.8518 4.0465 31 1 1.6464 -4.5015 0.4643 32 1 3.2381 -2.6941 -1.5445 33 1 3.4061 -4.5218 -1.3624 34 1 0.9562 -4.8064 -1.9574 35 1 0.7875 -2.9790 -2.1393 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595300385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:45 Heat of formation + Delta-G solvation = 39.297230 kcal Electronic energy + Delta-G solvation = -14109.553185 eV Core-core repulsion = 11915.681705 eV Total energy + Delta-G solvation = -2193.871480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.80509 -38.59910 -35.47104 -33.22474 -30.70611 -26.95612 -26.36264 -24.90257 -23.06161 -22.37922 -21.42940 -20.18017 -18.18248 -17.23554 -16.51557 -16.39350 -15.77047 -15.33907 -14.67153 -14.38494 -13.99604 -13.43838 -13.23453 -13.10146 -12.82381 -12.64046 -12.51460 -12.27994 -11.99997 -11.85529 -11.50683 -11.35608 -11.32574 -11.03600 -10.84323 -10.71193 -10.45039 -8.51800 -7.77560 -5.43534 1.43598 1.45901 1.52601 2.49277 3.14094 3.41870 3.50852 3.84534 3.89120 3.99720 4.09054 4.29598 4.47729 4.54145 4.57479 4.80086 4.82175 4.91916 4.93906 4.94684 5.01311 5.10575 5.13972 5.17119 5.23494 5.35173 5.43946 5.52631 5.63670 5.67940 5.72964 5.92167 6.46084 7.16683 7.88588 8.37833 9.12013 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.023301 B = 0.010947 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.366730 B = 2557.163115 C = 3388.530038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.039 4.039 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.059 0.941 9 N -0.573 5.573 10 C 0.150 3.850 11 C -0.104 4.104 12 C -0.116 4.116 13 C -0.136 4.136 14 C -0.129 4.129 15 C -0.133 4.133 16 C 0.101 3.899 17 C -0.182 4.182 18 C -0.220 4.220 19 H 0.250 0.750 20 H 0.023 0.977 21 H 0.065 0.935 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -7.173 8.109 10.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.236 4.236 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.077 0.923 9 N -0.290 5.290 10 C 0.025 3.975 11 C -0.144 4.144 12 C -0.135 4.135 13 C -0.173 4.173 14 C -0.167 4.167 15 C -0.171 4.171 16 C -0.008 4.008 17 C -0.220 4.220 18 C -0.261 4.261 19 H 0.059 0.941 20 H 0.042 0.958 21 H 0.083 0.917 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.913 -7.019 8.066 10.732 hybrid contribution 0.223 1.232 -0.472 1.338 sum 1.135 -5.787 7.594 9.615 Atomic orbital electron populations 1.70174 1.06699 1.26267 1.52769 1.25763 0.95627 1.01365 1.00846 0.85580 0.78035 0.79988 0.78359 1.20241 1.21797 1.20450 1.19224 0.94207 0.86873 1.38738 0.92346 1.43707 1.49236 1.01864 1.34218 1.20884 0.90609 1.00816 0.85228 1.21855 0.97694 0.99661 0.95165 1.22535 0.97997 0.98477 0.94463 1.22937 0.98535 1.00227 0.95624 1.22760 0.98403 0.99595 0.95897 1.22975 1.00653 0.96551 0.96878 1.21525 1.01629 0.89899 0.87703 1.23037 0.91743 1.02250 1.04985 1.23281 0.97899 1.00842 1.04090 0.94062 0.95835 0.91716 0.94909 0.93018 0.91144 0.91790 0.90121 0.90144 0.89759 0.90081 0.91886 0.87214 0.90859 0.86949 0.87936 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.20 11.33 21.65 0.25 -53.96 16 2 C -0.04 -2.19 4.96 84.86 0.42 -1.77 16 3 Si 0.95 45.30 29.61 68.60 2.03 47.33 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.26 -14.44 8.63 84.03 0.73 -13.71 16 8 H 0.06 3.24 6.55 -2.91 -0.02 3.22 16 9 N -0.57 -29.10 2.78 -678.03 -1.88 -30.99 16 10 C 0.15 7.17 5.33 86.38 0.46 7.63 16 11 C -0.10 -4.15 5.38 30.60 0.16 -3.99 16 12 C -0.12 -3.79 3.66 -10.21 -0.04 -3.82 16 13 C -0.14 -3.61 7.64 31.12 0.24 -3.38 16 14 C -0.13 -2.90 8.08 31.12 0.25 -2.65 16 15 C -0.13 -3.58 7.64 31.18 0.24 -3.35 16 16 C 0.10 4.33 6.56 44.99 0.30 4.63 16 17 C -0.18 -7.11 9.80 30.62 0.30 -6.81 16 18 C -0.22 -9.06 10.36 30.62 0.32 -8.74 16 19 H 0.25 14.35 8.32 -92.71 -0.77 13.58 16 20 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 21 H 0.07 3.58 5.36 -2.38 -0.01 3.56 16 22 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.93 7.84 -2.39 -0.02 1.91 16 24 H 0.07 2.51 8.13 -2.39 -0.02 2.49 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 2.08 8.10 -2.38 -0.02 2.06 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.08 2.11 7.90 -2.39 -0.02 2.09 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 32 H 0.07 3.21 6.37 -2.39 -0.02 3.20 16 33 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -61.13 282.99 4.80 -56.33 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.03 Total: 17.24 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.37 Total: -35.96 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.64 Total: -84.94 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -61.13 4.80 -56.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595300385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.629 kcal (2) G-P(sol) polarization free energy of solvation -61.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds