Wall clock time and date at job start Sun Mar 29 2020 21:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47133 * 269.99910 * 3 2 1 5 5 H 1.48501 * 109.46844 * 29.99938 * 3 2 1 6 6 H 1.48500 * 109.47174 * 150.00005 * 3 2 1 7 7 C 1.37876 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99683 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47055 * 180.02562 * 13 12 11 15 15 C 1.34509 * 125.79251 * 90.00216 * 14 13 12 16 16 C 1.41382 * 106.84493 * 180.02562 * 15 14 13 17 17 C 1.34525 * 106.83881 * 0.02562 * 16 15 14 18 18 O 1.34301 * 108.41856 * 359.73761 * 17 16 15 19 19 H 0.97001 * 120.00215 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 22 22 H 1.00895 * 111.00497 * 56.04005 * 10 9 7 23 23 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 24 24 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 25 25 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 26 26 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 27 27 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 28 28 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 29 29 H 1.08003 * 126.57870 * 359.96205 * 15 14 13 30 30 H 1.07996 * 126.58216 * 179.97438 * 16 15 14 31 31 H 1.07999 * 125.79058 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5052 -4.9070 0.0012 12 6 2.5302 -6.0431 0.0019 13 6 1.8008 -7.3880 0.0019 14 6 2.8103 -8.5069 0.0032 15 6 3.3364 -9.0905 1.0949 16 6 4.2330 -10.0831 0.6370 17 6 4.2016 -10.0463 -0.7073 18 8 3.3341 -9.0934 -1.0856 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8399 -3.5483 0.7835 23 1 0.8813 -4.9815 -0.8895 24 1 0.8795 -4.9813 0.8905 25 1 3.1557 -5.9685 -0.8877 26 1 3.1545 -5.9686 0.8923 27 1 1.1755 -7.4621 0.8916 28 1 1.1763 -7.4626 -0.8883 29 1 3.1169 -8.8468 2.1240 30 1 4.8293 -10.7435 1.2490 31 1 4.7737 -10.6787 -1.3700 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596065661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:59 Heat of formation + Delta-G solvation = -2.812211 kcal Electronic energy + Delta-G solvation = -12763.742299 eV Core-core repulsion = 10432.211722 eV Total energy + Delta-G solvation = -2331.530577 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.57108 -36.23357 -33.84523 -32.89772 -32.07430 -29.21219 -26.67748 -24.37259 -21.78491 -21.55964 -21.08551 -20.29192 -17.34368 -16.40390 -15.97388 -15.35814 -14.78233 -14.61294 -13.58768 -13.41602 -13.20831 -12.86610 -12.71528 -12.23848 -11.82594 -11.53026 -11.47253 -10.98228 -10.69091 -10.59183 -10.39808 -9.97544 -9.87185 -9.17843 -8.46855 -8.45312 -7.28314 -6.02246 -4.04220 1.70916 2.57683 2.98272 3.33420 3.38877 3.42943 4.43768 4.62468 4.95108 4.97691 5.10882 5.18879 5.33727 5.50639 5.63795 5.73706 5.79591 5.90244 5.97259 6.07547 6.15237 6.43232 6.50905 6.55512 7.12367 7.26482 7.43191 7.79763 8.13999 8.40857 8.63001 9.05178 9.60749 11.08979 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.083884 B = 0.004309 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.713488 B = 6496.785803 C = 6624.596778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.059 3.941 12 C -0.112 4.112 13 C -0.042 4.042 14 C 0.003 3.997 15 C -0.220 4.220 16 C -0.214 4.214 17 C -0.051 4.051 18 O -0.176 6.176 19 H 0.261 0.739 20 H 0.028 0.972 21 H -0.014 1.014 22 H 0.328 0.672 23 H 0.065 0.935 24 H 0.019 0.981 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 -18.031 1.138 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.079 4.079 14 C -0.047 4.047 15 C -0.239 4.239 16 C -0.233 4.233 17 C -0.119 4.119 18 O -0.072 6.072 19 H 0.071 0.929 20 H 0.046 0.954 21 H 0.004 0.996 22 H 0.145 0.855 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.280 -17.805 0.155 18.572 hybrid contribution 0.205 0.693 1.126 1.338 sum 5.485 -17.112 1.281 18.015 Atomic orbital electron populations 1.69960 1.06102 1.26791 1.50964 1.24996 0.94887 0.99398 0.95336 0.86471 0.79677 0.82943 0.78148 1.20590 1.21295 1.19831 1.21207 0.93549 0.90280 1.50301 0.91944 1.19563 0.90624 0.87410 0.95793 1.60638 1.21337 1.01326 1.48916 1.21872 0.95156 0.90182 0.99876 1.21600 0.98654 0.91733 1.03011 1.20203 0.94050 0.89512 1.04171 1.22630 0.99965 0.98065 0.84027 1.21590 1.02312 1.00403 0.99557 1.21820 1.03802 1.02837 0.94854 1.23979 0.97017 0.94815 0.96077 1.84038 1.46604 1.41251 1.35288 0.92909 0.95398 0.99580 0.85549 0.91678 0.96289 0.90923 0.91921 0.88934 0.89924 0.83602 0.83703 0.78365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.28 55.43 0.74 -26.42 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.19 5.16 5.44 -4.97 -0.03 5.14 16 10 N -0.69 -15.17 6.49 -115.06 -0.75 -15.92 16 11 C 0.06 1.04 5.69 -3.82 -0.02 1.02 16 12 C -0.11 -1.60 5.46 -26.73 -0.15 -1.75 16 13 C -0.04 -0.50 5.75 -27.89 -0.16 -0.66 16 14 C 0.00 0.04 6.57 -35.63 -0.23 -0.19 16 15 C -0.22 -2.60 10.81 -39.70 -0.43 -3.03 16 16 C -0.21 -2.27 10.91 -39.70 -0.43 -2.70 16 17 C -0.05 -0.53 12.09 29.42 0.36 -0.18 16 18 O -0.18 -2.30 10.65 5.69 0.06 -2.24 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 21 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 22 H 0.33 6.84 8.72 -39.29 -0.34 6.50 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -31.58 272.93 -6.91 -38.49 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.54 Total: 1.15 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.51 Total: -16.05 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.01 Total: -42.34 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: 0.06 Total: -2.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.58 -6.91 -38.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596065661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.679 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds