Wall clock time and date at job start Sun Mar 29 2020 21:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47133 * 269.99910 * 3 2 1 5 5 H 1.48501 * 109.46844 * 29.99938 * 3 2 1 6 6 H 1.48500 * 109.47174 * 150.00005 * 3 2 1 7 7 C 1.37876 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99683 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47055 * 180.02562 * 13 12 11 15 15 C 1.34509 * 125.79251 * 90.00216 * 14 13 12 16 16 C 1.41382 * 106.84493 * 180.02562 * 15 14 13 17 17 C 1.34525 * 106.83881 * 0.02562 * 16 15 14 18 18 O 1.34301 * 108.41856 * 359.73761 * 17 16 15 19 19 H 0.97001 * 120.00215 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 22 22 H 1.00895 * 111.00497 * 56.04005 * 10 9 7 23 23 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 24 24 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 25 25 H 1.09001 * 109.46801 * 300.00064 * 12 11 10 26 26 H 1.09001 * 109.46998 * 59.99660 * 12 11 10 27 27 H 1.08996 * 109.46952 * 300.00302 * 13 12 11 28 28 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 29 29 H 1.08003 * 126.57870 * 359.96205 * 15 14 13 30 30 H 1.07996 * 126.58216 * 179.97438 * 16 15 14 31 31 H 1.07999 * 125.79058 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5052 -4.9070 0.0012 12 6 2.5302 -6.0431 0.0019 13 6 1.8008 -7.3880 0.0019 14 6 2.8103 -8.5069 0.0032 15 6 3.3364 -9.0905 1.0949 16 6 4.2330 -10.0831 0.6370 17 6 4.2016 -10.0463 -0.7073 18 8 3.3341 -9.0934 -1.0856 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8399 -3.5483 0.7835 23 1 0.8813 -4.9815 -0.8895 24 1 0.8795 -4.9813 0.8905 25 1 3.1557 -5.9685 -0.8877 26 1 3.1545 -5.9686 0.8923 27 1 1.1755 -7.4621 0.8916 28 1 1.1763 -7.4626 -0.8883 29 1 3.1169 -8.8468 2.1240 30 1 4.8293 -10.7435 1.2490 31 1 4.7737 -10.6787 -1.3700 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596065661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:59 Heat of formation + Delta-G solvation = -23.706504 kcal Electronic energy + Delta-G solvation = -12764.648344 eV Core-core repulsion = 10432.211722 eV Total energy + Delta-G solvation = -2332.436622 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.43427 -37.78335 -35.44675 -34.16645 -33.56755 -30.53378 -28.36885 -25.84483 -23.47942 -22.63983 -22.48623 -21.19833 -18.58300 -18.15162 -17.00147 -16.83005 -16.53338 -15.87509 -15.13639 -14.87368 -14.68501 -13.93215 -13.69991 -13.51012 -13.40300 -13.26289 -12.81044 -12.61687 -12.50036 -12.23862 -11.94754 -11.63451 -11.28774 -10.81043 -10.66402 -9.32635 -9.12702 -8.23101 -6.34683 0.84335 1.41725 1.43858 1.55131 1.74238 2.16956 2.40420 3.10167 3.52601 3.84055 4.01325 4.17834 4.26263 4.40558 4.41584 4.56530 4.72468 4.80280 4.97111 5.01928 5.07623 5.21298 5.24161 5.27904 5.34647 5.61475 5.66705 6.01635 6.26695 6.44221 6.72418 6.88705 7.36509 8.88647 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.083884 B = 0.004309 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.713488 B = 6496.785803 C = 6624.596778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.206 3.794 10 N -0.694 5.694 11 C 0.059 3.941 12 C -0.096 4.096 13 C -0.034 4.034 14 C -0.023 4.023 15 C -0.224 4.224 16 C -0.227 4.227 17 C -0.050 4.050 18 O -0.197 6.197 19 H 0.266 0.734 20 H 0.000 1.000 21 H -0.037 1.037 22 H 0.336 0.664 23 H 0.059 0.941 24 H 0.026 0.974 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 -18.580 1.454 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.325 5.325 11 C -0.070 4.070 12 C -0.134 4.134 13 C -0.072 4.072 14 C -0.073 4.073 15 C -0.243 4.243 16 C -0.246 4.246 17 C -0.117 4.117 18 O -0.094 6.094 19 H 0.075 0.925 20 H 0.018 0.982 21 H -0.019 1.019 22 H 0.153 0.847 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.175 0.825 30 H 0.186 0.814 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 6.621 -18.380 0.477 19.542 hybrid contribution -0.202 0.760 1.026 1.293 sum 6.419 -17.621 1.503 18.813 Atomic orbital electron populations 1.70085 1.07839 1.28084 1.51444 1.25979 0.95823 1.03475 0.94481 0.85300 0.78518 0.77792 0.78480 1.19860 1.20551 1.18674 1.21573 0.93856 0.91505 1.50788 0.91745 1.19229 0.90697 0.88958 0.93319 1.60513 1.20748 1.01823 1.49393 1.21950 0.95979 0.89193 0.99896 1.21410 0.97635 0.91731 1.02660 1.20099 0.93923 0.88027 1.05128 1.22699 1.01114 0.99076 0.84415 1.21919 1.02073 1.00372 0.99970 1.22192 1.03989 1.03055 0.95370 1.24785 0.95979 0.93990 0.96955 1.84024 1.47399 1.42124 1.35860 0.92544 0.98196 1.01888 0.84739 0.92225 0.95616 0.92127 0.91361 0.87354 0.89700 0.82457 0.81399 0.74870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.28 21.45 0.28 -56.79 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.98 44.65 29.54 68.60 2.03 46.67 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.39 9.32 25.60 0.24 -31.15 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 11.31 5.44 85.56 0.47 11.77 16 10 N -0.69 -30.68 6.49 -517.94 -3.36 -34.04 16 11 C 0.06 2.08 5.69 86.31 0.49 2.57 16 12 C -0.10 -2.69 5.46 30.60 0.17 -2.52 16 13 C -0.03 -0.79 5.75 29.85 0.17 -0.61 16 14 C -0.02 -0.57 6.57 24.83 0.16 -0.40 16 15 C -0.22 -4.94 10.81 22.19 0.24 -4.71 16 16 C -0.23 -4.32 10.91 22.19 0.24 -4.08 16 17 C -0.05 -0.94 12.09 66.97 0.81 -0.13 16 18 O -0.20 -4.94 10.65 -2.55 -0.03 -4.96 16 19 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 20 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 21 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 22 H 0.34 13.95 8.72 -89.70 -0.78 13.16 16 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.24 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -67.51 272.93 2.69 -64.82 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.32 Total: 13.06 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.45 Total: -28.76 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -3.08 Total: -90.83 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.03 Total: -4.96 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.51 2.69 -64.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596065661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.110 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds