Wall clock time and date at job start Sun Mar 29 2020 21:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47254 * 2 1 4 4 C 1.36751 * 119.99971 * 264.44915 * 3 2 1 5 5 H 1.07998 * 119.99927 * 193.79939 * 4 3 2 6 6 C 1.39098 * 119.99933 * 13.79589 * 4 3 2 7 7 N 1.31334 * 120.00328 * 34.89457 * 6 4 3 8 8 Si 1.86801 * 119.99997 * 214.89177 * 6 4 3 9 9 H 1.48494 * 109.47188 * 90.00411 * 8 6 4 10 10 H 1.48503 * 109.47161 * 210.00278 * 8 6 4 11 11 H 1.48503 * 109.46911 * 330.00111 * 8 6 4 12 12 C 1.34774 * 119.99654 * 84.44565 * 3 2 1 13 13 O 1.21669 * 119.99692 * 184.02388 * 12 3 2 14 14 C 1.47216 * 120.00294 * 4.02781 * 12 3 2 15 15 N 1.31690 * 125.86093 * 355.03684 * 14 12 3 16 16 C 1.33088 * 109.22223 * 180.02562 * 15 14 12 17 17 C 1.35569 * 108.40160 * 359.97438 * 16 15 14 18 18 N 1.36017 * 107.08429 * 0.02562 * 17 16 15 19 19 H 0.97001 * 126.49820 * 180.26155 * 18 17 16 20 20 H 1.09004 * 109.47017 * 299.99795 * 1 2 3 21 21 H 1.08992 * 109.47064 * 59.99844 * 1 2 3 22 22 H 1.09001 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47351 * 239.99946 * 2 1 3 24 24 H 1.09005 * 109.47309 * 120.00375 * 2 1 3 25 25 H 0.96995 * 120.00499 * 179.97438 * 7 6 4 26 26 H 1.07997 * 125.80210 * 180.02562 * 16 15 14 27 27 H 1.08006 * 126.46585 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3543 1.9877 -1.1787 5 1 2.9171 2.9094 -1.1706 6 6 1.9712 1.4174 -2.3882 7 7 0.8221 0.7884 -2.4830 8 14 3.0910 1.5461 -3.8778 9 1 4.0131 0.3825 -3.9059 10 1 2.2697 1.5568 -5.1150 11 1 3.8803 2.8014 -3.7967 12 6 2.1364 2.0542 1.1617 13 8 2.4718 3.2237 1.1559 14 6 1.8598 1.3741 2.4378 15 7 1.4033 0.1465 2.5746 16 6 1.2744 -0.1313 3.8698 17 6 1.6623 0.9556 4.5812 18 7 2.0326 1.9089 3.6844 19 1 2.3611 2.7980 3.8902 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 0.5548 0.3910 -3.3264 26 1 0.9215 -1.0643 4.2838 27 1 1.6750 1.0474 5.6573 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:51 Heat of formation + Delta-G solvation = 47.031646 kcal Electronic energy + Delta-G solvation = -13939.204878 eV Core-core repulsion = 11506.295349 eV Total energy + Delta-G solvation = -2432.909529 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.49928 -38.08603 -35.07057 -32.38609 -31.59041 -29.39606 -28.94660 -25.24692 -22.57075 -21.75641 -20.88520 -19.69753 -17.36622 -16.65776 -15.62193 -14.73053 -14.58337 -14.28169 -13.47307 -13.38184 -13.19863 -12.62415 -12.40254 -11.97596 -11.26457 -11.04885 -10.69373 -10.39175 -10.19574 -10.03042 -9.59108 -9.02297 -8.89930 -8.56524 -8.01839 -7.76718 -6.48567 -3.79825 2.12650 3.11133 3.23325 3.27140 3.34452 3.47367 4.11033 4.32376 4.86420 5.06471 5.21745 5.48619 5.80504 5.88191 6.44735 6.58741 6.85475 6.92930 7.01372 7.27647 7.38084 7.39182 7.72667 7.99277 8.05426 8.36612 8.57049 9.10847 9.35262 9.96037 10.46692 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.052964 B = 0.010466 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.530799 B = 2674.633788 C = 3028.971889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.111 3.889 3 N -0.389 5.389 4 C -0.321 4.321 5 H 0.109 0.891 6 C 0.047 3.953 7 N -0.825 5.825 8 Si 0.914 3.086 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.486 3.514 13 O -0.607 6.607 14 C 0.201 3.799 15 N -0.458 5.458 16 C -0.037 4.037 17 C -0.064 4.064 18 N -0.542 5.542 19 H 0.424 0.576 20 H 0.028 0.972 21 H 0.099 0.901 22 H 0.031 0.969 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.272 0.728 26 H 0.167 0.833 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -3.299 7.702 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 N -0.103 5.103 4 C -0.449 4.449 5 H 0.126 0.874 6 C -0.162 4.162 7 N -0.459 5.459 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.274 3.726 13 O -0.495 6.495 14 C -0.061 4.061 15 N -0.180 5.180 16 C -0.189 4.189 17 C -0.201 4.201 18 N -0.143 5.143 19 H 0.262 0.738 20 H 0.047 0.953 21 H 0.118 0.882 22 H 0.050 0.950 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.184 0.816 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.353 -3.407 6.863 7.670 hybrid contribution 0.597 0.739 0.260 0.985 sum 0.949 -2.667 7.124 7.666 Atomic orbital electron populations 1.22139 0.96053 0.99680 1.02749 1.21761 0.95514 0.82379 1.01615 1.43581 1.50859 1.11467 1.04423 1.19729 1.33023 1.10736 0.81433 0.87355 1.25325 0.95052 0.96639 0.99171 1.70088 1.15839 1.32935 1.27083 0.86133 0.80675 0.79371 0.79866 1.20027 1.20942 1.19053 1.16185 0.89351 0.85718 0.81340 1.90633 1.56909 1.15746 1.86226 1.23509 1.04449 0.90639 0.87530 1.70592 1.17363 1.11804 1.18243 1.22477 1.07108 0.99353 0.89960 1.22778 1.09944 0.91309 0.96082 1.43116 1.49260 1.15521 1.06451 0.73814 0.95266 0.88238 0.94959 0.91736 0.89418 0.91718 0.81604 0.80957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.38 37.15 0.35 -3.11 15 2 C 0.11 2.68 4.89 -4.04 -0.02 2.66 15 3 N -0.39 -10.44 2.63 -116.12 -0.31 -10.74 15 4 C -0.32 -8.97 9.25 -15.04 -0.14 -9.10 15 5 H 0.11 3.16 7.46 -52.49 -0.39 2.77 15 6 C 0.05 1.21 4.50 -17.45 -0.08 1.13 15 7 N -0.82 -21.22 9.18 55.50 0.51 -20.71 15 8 Si 0.91 19.86 29.67 -169.99 -5.04 14.81 15 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 11 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 12 C 0.49 12.80 7.57 -12.61 -0.10 12.70 15 13 O -0.61 -17.35 16.73 5.22 0.09 -17.26 15 14 C 0.20 4.43 7.55 -154.47 -1.17 3.27 15 15 N -0.46 -9.40 6.54 -11.28 -0.07 -9.48 15 16 C -0.04 -0.61 11.85 -17.96 -0.21 -0.82 15 17 C -0.06 -0.92 12.03 -16.65 -0.20 -1.12 15 18 N -0.54 -9.42 6.18 -10.66 -0.07 -9.48 15 19 H 0.42 6.47 8.96 -40.82 -0.37 6.10 15 20 H 0.03 0.68 7.22 -51.93 -0.37 0.31 15 21 H 0.10 2.55 5.56 -51.93 -0.29 2.27 15 22 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.06 1.61 6.60 -51.93 -0.34 1.26 15 24 H 0.09 2.03 5.22 -51.93 -0.27 1.76 15 25 H 0.27 6.51 8.31 -40.82 -0.34 6.17 15 26 H 0.17 2.11 8.06 -52.49 -0.42 1.69 15 27 H 0.17 1.66 8.06 -52.48 -0.42 1.23 15 LS Contribution 232.82 15.07 3.51 3.51 Total: -1.00 -31.10 232.82 -5.38 -36.48 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.44 Total: 7.26 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.56 Total: 5.61 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.06 Total: -50.41 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.09 Total: -17.26 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.04 Total: 14.81 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.10 -5.38 -36.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.513 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds