Wall clock time and date at job start Sun Mar 29 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21608 * 119.99713 * 0.02562 * 13 12 2 15 15 C 1.47405 * 120.00347 * 179.97438 * 13 12 2 16 16 N 1.31612 * 125.86677 * 0.02758 * 15 13 12 17 17 C 1.33096 * 109.09973 * 179.97438 * 16 15 13 18 18 C 1.35560 * 108.34788 * 359.97438 * 17 16 15 19 19 N 1.35407 * 107.15978 * 359.77182 * 18 17 16 20 20 H 0.96999 * 126.43427 * 180.22202 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 26 26 H 1.08000 * 125.82661 * 179.97438 * 17 16 15 27 27 H 1.08005 * 126.42119 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8583 1.1617 -2.4117 15 6 2.6390 -0.7131 -3.5606 16 7 2.9837 -1.9813 -3.6321 17 6 3.3769 -2.2564 -4.8735 18 6 3.2775 -1.1248 -5.6132 19 7 2.8091 -0.1526 -4.7953 20 1 2.6304 0.7690 -5.0393 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1609 3.4844 25 1 2.2490 -1.6318 -1.1526 26 1 3.7172 -3.2172 -5.2305 27 1 3.5225 -1.0193 -6.6598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596997339.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:24 Heat of formation + Delta-G solvation = 15.281196 kcal Electronic energy + Delta-G solvation = -13277.482909 eV Core-core repulsion = 10843.196578 eV Total energy + Delta-G solvation = -2434.286332 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.01903 -38.55822 -34.88206 -32.81350 -32.15817 -30.03065 -28.40153 -25.25158 -23.53147 -21.42093 -20.90075 -19.54719 -18.65330 -16.60076 -15.59743 -15.30925 -15.19376 -14.39250 -13.82532 -13.67233 -13.56474 -13.04536 -12.39375 -11.72063 -11.08124 -10.96755 -10.77584 -10.31905 -10.22044 -10.16081 -10.15328 -9.49061 -9.05804 -8.57601 -8.50481 -7.94053 -6.11184 -4.19955 1.65060 2.83268 2.94240 3.28005 3.34320 3.37740 3.91693 4.09768 4.38406 4.75684 5.13227 5.21682 5.41900 5.46371 6.06190 6.64651 6.81806 6.95411 7.12206 7.22997 7.36201 7.51431 7.69608 7.86410 7.99736 8.13216 8.61893 8.74915 9.01309 9.46919 10.95067 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.056288 B = 0.007430 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.324367 B = 3767.759154 C = 4094.117386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.676 5.676 13 C 0.586 3.414 14 O -0.558 6.558 15 C 0.163 3.837 16 N -0.449 5.449 17 C -0.032 4.032 18 C -0.041 4.041 19 N -0.529 5.529 20 H 0.428 0.572 21 H 0.015 0.985 22 H 0.093 0.907 23 H 0.029 0.971 24 H 0.264 0.736 25 H 0.402 0.598 26 H 0.175 0.825 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -3.842 -12.774 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.323 5.323 13 C 0.368 3.632 14 O -0.437 6.437 15 C -0.100 4.100 16 N -0.171 5.171 17 C -0.185 4.185 18 C -0.180 4.180 19 N -0.131 5.131 20 H 0.267 0.733 21 H 0.034 0.966 22 H 0.111 0.889 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.236 0.764 26 H 0.192 0.808 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.917 -3.427 -11.900 12.723 hybrid contribution 0.423 0.032 -0.154 0.451 sum 3.340 -3.395 -12.054 12.960 Atomic orbital electron populations 1.22093 0.98069 0.99459 1.01026 1.18899 0.91305 0.94061 0.79539 0.93044 1.21220 1.32485 1.13355 0.90068 0.91742 1.24880 0.94756 0.94971 0.99066 1.69901 1.35868 1.22539 1.23931 0.86405 0.78538 0.79957 0.81963 1.20560 1.21093 1.19705 1.46344 1.62419 1.14375 1.09131 1.16622 0.79098 0.85737 0.81745 1.90788 1.53018 1.15070 1.84837 1.23313 1.08381 0.90156 0.88132 1.70264 1.14100 1.11462 1.21279 1.22470 1.07124 0.99067 0.89823 1.22875 1.07205 0.89718 0.98187 1.43002 1.47611 1.13225 1.09218 0.73260 0.96598 0.88874 0.95152 0.92556 0.76357 0.80813 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 15 2 C 0.26 6.85 2.56 -69.08 -0.18 6.68 15 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 15 4 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 15 5 H 0.06 1.69 7.74 -52.49 -0.41 1.28 15 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 15 7 N -0.88 -24.97 11.32 55.43 0.63 -24.35 15 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 12 N -0.68 -15.21 5.07 -56.02 -0.28 -15.50 15 13 C 0.59 12.60 7.78 -12.53 -0.10 12.50 15 14 O -0.56 -13.34 16.76 5.27 0.09 -13.25 15 15 C 0.16 2.89 7.95 -154.53 -1.23 1.66 15 16 N -0.45 -7.64 10.89 -11.26 -0.12 -7.76 15 17 C -0.03 -0.41 11.85 -17.96 -0.21 -0.62 15 18 C -0.04 -0.44 12.00 -16.93 -0.20 -0.65 15 19 N -0.53 -7.11 6.14 -10.78 -0.07 -7.18 15 20 H 0.43 4.84 8.96 -40.82 -0.37 4.47 15 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 15 22 H 0.09 2.52 6.07 -51.93 -0.32 2.20 15 23 H 0.03 0.72 8.14 -51.93 -0.42 0.29 15 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 25 H 0.40 8.45 8.22 -40.82 -0.34 8.12 15 26 H 0.17 1.65 8.06 -52.49 -0.42 1.22 15 27 H 0.18 1.11 8.06 -52.48 -0.42 0.68 15 LS Contribution 245.75 15.07 3.70 3.70 Total: -1.00 -31.48 245.75 -5.69 -37.17 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -2.64 Total: 8.11 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.97 Total: 3.18 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.15 Total: -54.78 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.48 -5.69 -37.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596997339.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.449 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds