Wall clock time and date at job start Sun Mar 29 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21608 * 119.99713 * 0.02562 * 13 12 2 15 15 C 1.47405 * 120.00347 * 179.97438 * 13 12 2 16 16 N 1.31612 * 125.86677 * 0.02758 * 15 13 12 17 17 C 1.33096 * 109.09973 * 179.97438 * 16 15 13 18 18 C 1.35560 * 108.34788 * 359.97438 * 17 16 15 19 19 N 1.35407 * 107.15978 * 359.77182 * 18 17 16 20 20 H 0.96999 * 126.43427 * 180.22202 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 26 26 H 1.08000 * 125.82661 * 179.97438 * 17 16 15 27 27 H 1.08005 * 126.42119 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8583 1.1617 -2.4117 15 6 2.6390 -0.7131 -3.5606 16 7 2.9837 -1.9813 -3.6321 17 6 3.3769 -2.2564 -4.8735 18 6 3.2775 -1.1248 -5.6132 19 7 2.8091 -0.1526 -4.7953 20 1 2.6304 0.7690 -5.0393 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1609 3.4844 25 1 2.2490 -1.6318 -1.1526 26 1 3.7172 -3.2172 -5.2305 27 1 3.5225 -1.0193 -6.6598 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596997339.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:24 Heat of formation + Delta-G solvation = -8.572333 kcal Electronic energy + Delta-G solvation = -13278.517276 eV Core-core repulsion = 10843.196578 eV Total energy + Delta-G solvation = -2435.320698 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.14134 -40.28619 -36.81396 -34.50500 -33.58536 -31.59016 -29.95960 -27.36067 -25.03108 -22.60660 -22.44996 -21.17075 -20.11416 -18.32640 -17.31670 -17.08799 -16.59788 -16.05955 -15.24300 -14.92038 -14.88549 -14.48453 -14.39130 -13.73501 -13.02449 -12.90521 -12.78009 -12.28495 -12.14189 -11.31136 -11.30623 -11.24108 -11.13211 -10.61526 -9.96651 -9.46005 -8.18785 -6.36072 0.40526 1.45909 1.46656 1.57748 1.71885 1.74627 2.40278 2.45424 2.78396 3.11830 3.44648 4.12665 4.38523 4.50506 4.71082 4.89371 5.01966 5.05040 5.36350 5.53110 5.61748 5.68339 5.83972 6.05357 6.21040 6.67168 6.69299 6.97795 7.22676 7.39128 8.87874 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.056288 B = 0.007430 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.324367 B = 3767.759154 C = 4094.117386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.008 0.992 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.975 3.025 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.262 1.262 12 N -0.680 5.680 13 C 0.586 3.414 14 O -0.594 6.594 15 C 0.111 3.889 16 N -0.466 5.466 17 C -0.053 4.053 18 C 0.005 3.995 19 N -0.519 5.519 20 H 0.437 0.563 21 H 0.015 0.985 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.267 0.733 25 H 0.409 0.591 26 H 0.208 0.792 27 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 -5.412 -14.439 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.026 0.974 4 C -0.588 4.588 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.799 3.201 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.186 1.186 12 N -0.327 5.327 13 C 0.371 3.629 14 O -0.475 6.475 15 C -0.149 4.149 16 N -0.190 5.190 17 C -0.206 4.206 18 C -0.135 4.135 19 N -0.121 5.121 20 H 0.278 0.722 21 H 0.034 0.966 22 H 0.092 0.908 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.244 0.756 26 H 0.225 0.775 27 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.967 -4.996 -13.572 14.997 hybrid contribution 0.152 0.499 0.157 0.544 sum 4.119 -4.498 -13.415 14.736 Atomic orbital electron populations 1.21912 0.97740 0.99652 0.99975 1.18530 0.91540 0.92143 0.81119 0.97439 1.21499 1.32890 1.13686 0.90745 0.91176 1.25776 0.94736 0.95588 1.02181 1.70033 1.36716 1.23809 1.24781 0.85306 0.77860 0.79099 0.77843 1.20235 1.20599 1.18624 1.46078 1.63225 1.14527 1.08880 1.17019 0.77939 0.85375 0.82540 1.90745 1.54482 1.16639 1.85659 1.22297 1.13310 0.90903 0.88369 1.70166 1.13802 1.11137 1.23850 1.23204 1.07427 1.01383 0.88605 1.23850 1.02231 0.87726 0.99664 1.43078 1.46637 1.14212 1.08175 0.72190 0.96591 0.90849 0.94155 0.92353 0.75573 0.77531 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.33 15 2 C 0.27 14.60 2.56 44.25 0.11 14.71 15 3 H 0.01 0.48 7.58 -2.39 -0.02 0.46 15 4 C -0.55 -30.29 8.73 25.60 0.22 -30.07 15 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 15 6 C 0.02 0.96 5.30 84.66 0.45 1.41 15 7 N -0.92 -52.81 11.32 21.45 0.24 -52.57 15 8 Si 0.97 42.84 29.54 68.60 2.03 44.86 15 9 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 11 H -0.26 -11.01 7.11 99.48 0.71 -10.31 15 12 N -0.68 -31.62 5.07 -449.39 -2.28 -33.90 15 13 C 0.59 25.97 7.78 86.66 0.67 26.64 15 14 O -0.59 -29.57 16.76 -4.06 -0.07 -29.63 15 15 C 0.11 3.86 7.95 136.28 1.08 4.94 15 16 N -0.47 -15.18 10.89 -189.54 -2.06 -17.25 15 17 C -0.05 -1.17 11.85 83.88 0.99 -0.18 15 18 C 0.01 0.09 12.00 83.52 1.00 1.09 15 19 N -0.52 -12.71 6.14 -188.02 -1.16 -13.86 15 20 H 0.44 9.00 8.96 -92.71 -0.83 8.17 15 21 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 22 H 0.07 4.11 6.07 -2.39 -0.01 4.10 15 23 H 0.04 1.95 8.14 -2.38 -0.02 1.93 15 24 H 0.27 14.50 8.31 -92.71 -0.77 13.73 15 25 H 0.41 17.61 8.22 -92.71 -0.76 16.85 15 26 H 0.21 2.97 8.06 -2.91 -0.02 2.95 15 27 H 0.24 1.17 8.06 -2.91 -0.02 1.14 15 Total: -1.00 -70.81 245.75 1.53 -69.28 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -0.38 Total: 20.85 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.21 Total: 12.22 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -5.25 Total: -117.58 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.07 Total: -29.63 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -70.81 1.53 -69.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596997339.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.709 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds