Wall clock time and date at job start Sun Mar 29 2020 21:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30867 * 125.41008 * 2 1 4 4 C 1.33308 * 109.69633 * 179.88579 * 3 2 1 5 5 C 1.50703 * 126.10844 * 180.15106 * 4 3 2 6 6 C 1.36781 * 107.77807 * 0.37864 * 4 3 2 7 7 C 1.46640 * 126.84973 * 179.77537 * 6 4 3 8 8 O 1.21722 * 119.99985 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00044 * 180.02562 * 7 6 4 10 10 C 1.36882 * 119.99898 * 180.02562 * 9 7 6 11 11 H 1.07997 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.39010 * 119.99664 * 179.97438 * 10 9 7 13 13 N 1.31397 * 120.00503 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00115 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47139 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47431 * 119.99649 * 14 12 10 17 17 H 1.48497 * 109.47064 * 240.00185 * 14 12 10 18 18 N 1.34550 * 125.40914 * 180.31103 * 2 1 3 19 19 H 0.96996 * 126.47749 * 359.97438 * 18 2 1 20 20 H 1.09002 * 109.47152 * 269.68853 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.68954 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.68935 * 1 2 3 23 23 H 1.08997 * 109.47136 * 270.26608 * 5 4 3 24 24 H 1.08998 * 109.46696 * 30.26642 * 5 4 3 25 25 H 1.08999 * 109.46673 * 150.26707 * 5 4 3 26 26 H 0.96997 * 119.99948 * 359.97438 * 9 7 6 27 27 H 0.96993 * 120.00098 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0666 0.0000 4 6 3.5486 0.7056 0.0025 5 6 4.7332 1.6371 0.0066 6 6 3.5978 -0.6613 -0.0044 7 6 4.8022 -1.4979 -0.0093 8 8 5.9034 -0.9793 -0.0067 9 7 4.6898 -2.8410 -0.0166 10 6 5.8140 -3.6218 -0.0206 11 1 6.7911 -3.1617 -0.0183 12 6 5.6980 -5.0071 -0.0275 13 7 4.5093 -5.5669 -0.0297 14 14 7.2322 -6.0728 -0.0337 15 1 8.4375 -5.2053 -0.0305 16 1 7.2400 -6.9362 1.1744 17 1 7.2387 -6.9239 -1.2505 18 7 2.2866 -1.0966 -0.0060 19 1 1.9851 -2.0185 -0.0106 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 5.0183 1.8668 -1.0201 24 1 4.4689 2.5586 0.5252 25 1 5.5692 1.1594 0.5175 26 1 3.8123 -3.2542 -0.0182 27 1 4.4285 -6.5334 -0.0342 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598690298.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:08 Heat of formation + Delta-G solvation = 2.689446 kcal Electronic energy + Delta-G solvation = -13328.682654 eV Core-core repulsion = 10893.850303 eV Total energy + Delta-G solvation = -2434.832351 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.68580 -37.92368 -34.27459 -32.87805 -31.82946 -31.10619 -28.74115 -26.44791 -24.58972 -21.25244 -20.48373 -19.07669 -18.16141 -17.26136 -15.26634 -15.24381 -14.69196 -14.11952 -13.51021 -13.43720 -13.04238 -12.70982 -12.54485 -12.17202 -12.00625 -11.72999 -11.51734 -11.21773 -10.46031 -10.38741 -9.80901 -9.73490 -9.49025 -8.64004 -8.19329 -7.78124 -6.61971 -3.97914 1.96272 3.09317 3.18337 3.25674 3.30596 3.37521 4.04290 4.23293 4.60460 4.88812 5.19167 5.19644 5.51301 5.55306 5.68407 5.89841 6.09764 6.28621 6.36663 6.45644 6.66475 7.16123 7.38334 7.66753 7.87677 8.34872 8.45481 8.98095 9.31036 9.82624 10.55616 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.008424 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.184577 B = 3323.136179 C = 3916.874137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.205 3.795 3 N -0.496 5.496 4 C 0.057 3.943 5 C -0.066 4.066 6 C -0.044 4.044 7 C 0.507 3.493 8 O -0.576 6.576 9 N -0.551 5.551 10 C -0.297 4.297 11 H 0.110 0.890 12 C 0.023 3.977 13 N -0.897 5.897 14 Si 0.935 3.065 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.554 5.554 19 H 0.420 0.580 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.387 0.613 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 4.828 0.076 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 N -0.217 5.217 4 C -0.076 4.076 5 C -0.124 4.124 6 C -0.161 4.161 7 C 0.293 3.707 8 O -0.461 6.461 9 N -0.185 5.185 10 C -0.426 4.426 11 H 0.128 0.872 12 C -0.179 4.179 13 N -0.537 5.537 14 Si 0.761 3.239 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.161 5.161 19 H 0.258 0.742 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.107 0.893 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.220 0.780 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.676 5.766 0.073 8.822 hybrid contribution 0.124 -2.296 -0.030 2.299 sum -6.552 3.471 0.043 7.415 Atomic orbital electron populations 1.20164 0.85011 1.03863 1.03358 1.23137 0.95421 0.81922 1.05389 1.69909 1.01978 1.28450 1.21408 1.20858 0.92632 0.90614 1.03536 1.20141 0.93547 0.96385 1.02284 1.21576 0.83814 0.95777 1.14932 1.16475 0.86380 0.82045 0.85780 1.90642 1.25418 1.72698 1.57312 1.41814 1.09654 1.04086 1.62944 1.19852 0.87987 0.87668 1.47133 0.87202 1.25361 0.98555 0.97249 0.96771 1.69587 1.22701 1.12070 1.49379 0.85705 0.80920 0.79369 0.77857 1.18915 1.20551 1.20556 1.43251 1.06490 1.09929 1.56389 0.74160 0.90290 0.90857 0.89306 0.91669 0.92172 0.89207 0.77983 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.51 36.01 0.38 -0.31 15 2 C 0.20 3.29 8.12 -155.56 -1.26 2.03 15 3 N -0.50 -9.37 11.20 -6.81 -0.08 -9.45 15 4 C 0.06 1.16 7.15 -82.48 -0.59 0.57 15 5 C -0.07 -1.21 9.88 36.01 0.36 -0.85 15 6 C -0.04 -0.94 7.07 -82.15 -0.58 -1.52 15 7 C 0.51 12.56 7.74 -12.87 -0.10 12.46 15 8 O -0.58 -15.72 14.39 5.17 0.07 -15.65 15 9 N -0.55 -13.92 5.27 -12.18 -0.06 -13.99 15 10 C -0.30 -8.09 9.68 -15.01 -0.15 -8.23 15 11 H 0.11 3.12 7.15 -52.49 -0.38 2.74 15 12 C 0.02 0.60 5.50 -17.45 -0.10 0.51 15 13 N -0.90 -23.46 13.05 55.50 0.72 -22.74 15 14 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 15 15 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 18 N -0.55 -9.53 6.08 -7.01 -0.04 -9.57 15 19 H 0.42 6.19 8.31 -40.82 -0.34 5.85 15 20 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 21 H 0.07 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.09 0.86 8.14 -51.93 -0.42 0.43 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.09 1.78 6.48 -51.93 -0.34 1.45 15 26 H 0.39 9.18 7.13 -40.82 -0.29 8.89 15 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 244.61 15.07 3.69 3.69 Total: -1.00 -31.41 244.61 -5.35 -36.77 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -2.59 Total: 10.96 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.04 Total: 4.66 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.54 Total: -55.74 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.07 Total: -15.65 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.41 -5.35 -36.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598690298.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.455 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds