Wall clock time and date at job start Sun Mar 29 2020 21:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34126 * 125.99043 * 2 1 4 4 C 1.30509 * 109.25802 * 179.97438 * 3 2 1 5 5 C 1.50694 * 125.64982 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47316 * 275.00428 * 5 4 3 7 7 C 1.46499 * 119.99857 * 269.99895 * 6 5 4 8 8 C 1.36940 * 120.00181 * 90.00109 * 6 5 4 9 9 H 1.07998 * 119.99944 * 20.37293 * 8 6 5 10 10 C 1.38810 * 120.00078 * 200.36902 * 8 6 5 11 11 N 1.31618 * 119.99981 * 14.98461 * 10 8 6 12 12 Si 1.86795 * 120.00142 * 194.97888 * 10 8 6 13 13 H 1.48502 * 109.46943 * 85.00414 * 12 10 8 14 14 H 1.48501 * 109.47545 * 205.00499 * 12 10 8 15 15 H 1.48500 * 109.47176 * 325.00864 * 12 10 8 16 16 N 1.35041 * 108.69689 * 0.02562 * 4 3 2 17 17 H 0.97002 * 126.39800 * 180.26458 * 16 4 3 18 18 C 1.34670 * 125.99180 * 179.97438 * 2 1 3 19 19 C 1.50702 * 126.59042 * 359.96725 * 18 2 1 20 20 H 1.09002 * 109.47127 * 270.00011 * 1 2 3 21 21 H 1.08996 * 109.46919 * 30.00151 * 1 2 3 22 22 H 1.08996 * 109.47114 * 149.99945 * 1 2 3 23 23 H 1.09003 * 109.47042 * 35.00550 * 5 4 3 24 24 H 1.08999 * 109.46748 * 155.00198 * 5 4 3 25 25 H 1.09003 * 109.46927 * 95.09964 * 7 6 5 26 26 H 1.09004 * 109.47549 * 215.09500 * 7 6 5 27 27 H 1.09004 * 109.47445 * 335.09563 * 7 6 5 28 28 H 0.96998 * 120.00222 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.46764 * 270.01871 * 19 18 2 30 30 H 1.09004 * 109.46851 * 30.01437 * 19 18 2 31 31 H 1.08996 * 109.47279 * 150.01278 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 0.0006 5 6 4.7386 1.6293 0.0002 6 7 5.0523 2.0219 -1.3759 7 6 5.9806 1.2170 -2.1737 8 6 4.4777 3.1413 -1.9165 9 1 4.0710 3.9051 -1.2704 10 6 4.4182 3.2942 -3.2948 11 7 4.6348 2.2614 -4.0815 12 14 4.0307 4.9656 -4.0333 13 1 5.2803 5.7606 -4.1419 14 1 3.4398 4.7854 -5.3837 15 1 3.0640 5.6800 -3.1612 16 7 3.5913 -0.6401 0.0004 17 1 4.3913 -1.1886 0.0043 18 6 2.2984 -1.0896 0.0005 19 6 1.8473 -2.5275 0.0018 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 4.5125 2.5183 0.5891 24 1 5.5948 1.1136 0.4350 25 1 5.4174 0.5089 -2.7817 26 1 6.5628 1.8707 -2.8232 27 1 6.6523 0.6724 -1.5101 28 1 4.5929 2.3682 -5.0447 29 1 1.7387 -2.8732 1.0298 30 1 0.8892 -2.6082 -0.5118 31 1 2.5875 -3.1410 -0.5116 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600111511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:04 Heat of formation + Delta-G solvation = 70.419937 kcal Electronic energy + Delta-G solvation = -13850.893892 eV Core-core repulsion = 11554.831650 eV Total energy + Delta-G solvation = -2296.062242 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.33418 -35.57995 -32.59419 -32.19629 -30.98894 -28.06753 -27.39119 -25.81674 -23.68850 -21.45075 -19.98302 -18.99476 -16.85949 -16.38500 -15.03748 -14.60179 -13.88090 -13.53434 -13.40887 -12.81012 -12.65793 -12.55187 -12.18610 -12.01260 -11.76983 -11.47659 -11.20420 -10.83265 -10.65120 -10.41909 -9.97742 -9.85011 -9.11598 -9.02934 -8.52712 -7.42141 -6.84521 -5.70273 -3.13714 2.68323 3.44182 3.49855 3.52643 3.77900 3.88000 4.57880 5.15535 5.37987 5.40465 5.52014 5.64992 5.68952 5.76485 5.92308 5.97072 6.05002 6.11410 6.34177 6.50901 6.61785 6.70433 6.92711 7.30163 7.50563 7.64739 7.88894 8.11851 8.38753 8.97962 9.24328 9.84688 10.30756 11.35790 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036385 B = 0.009517 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.368368 B = 2941.248988 C = 3243.176655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.003 4.003 3 N -0.482 5.482 4 C 0.222 3.778 5 C 0.221 3.779 6 N -0.584 5.584 7 C 0.160 3.840 8 C -0.245 4.245 9 H 0.076 0.924 10 C 0.001 3.999 11 N -0.910 5.910 12 Si 0.908 3.092 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.278 1.278 16 N -0.568 5.568 17 H 0.408 0.592 18 C -0.059 4.059 19 C -0.066 4.066 20 H 0.059 0.941 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.028 0.972 26 H 0.050 0.950 27 H -0.002 1.002 28 H 0.252 0.748 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 -8.036 7.918 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.132 4.132 3 N -0.202 5.202 4 C -0.045 4.045 5 C 0.091 3.909 6 N -0.305 5.305 7 C 0.016 3.984 8 C -0.375 4.375 9 H 0.094 0.906 10 C -0.197 4.197 11 N -0.555 5.555 12 Si 0.738 3.262 13 H -0.214 1.214 14 H -0.219 1.219 15 H -0.203 1.203 16 N -0.171 5.171 17 H 0.245 0.755 18 C -0.174 4.174 19 C -0.125 4.125 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.403 -7.181 7.699 10.799 hybrid contribution 0.304 -0.451 -0.776 0.947 sum -2.099 -7.632 6.923 10.515 Atomic orbital electron populations 1.19935 0.88804 1.01999 1.01128 1.20459 0.95990 0.88673 1.08107 1.70169 1.00193 1.29546 1.20256 1.25503 0.97034 0.81176 1.00813 1.19559 0.88087 0.93928 0.89374 1.44241 1.48360 1.28056 1.09823 1.20874 0.90682 0.94492 0.92390 1.19279 1.33940 0.94311 0.89940 0.90644 1.25014 1.00551 0.97510 0.96605 1.70088 1.54320 1.27957 1.03085 0.86198 0.77987 0.83666 0.78316 1.21449 1.21876 1.20311 1.43208 1.07278 1.08497 1.58135 0.75548 1.20764 0.84552 0.96600 1.15492 1.20070 1.01343 0.89460 1.01578 0.92236 0.91518 0.92180 0.90307 0.92748 0.95406 0.93152 0.98366 0.93834 0.91889 0.90707 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.22 36.00 0.37 -0.60 16 2 C 0.00 -0.05 7.09 -82.86 -0.59 -0.64 16 3 N -0.48 -11.35 11.25 -7.07 -0.08 -11.43 16 4 C 0.22 4.82 7.74 -155.41 -1.20 3.62 16 5 C 0.22 4.68 6.33 -5.20 -0.03 4.65 16 6 N -0.58 -14.90 2.91 -182.50 -0.53 -15.44 16 7 C 0.16 3.92 9.02 59.85 0.54 4.46 16 8 C -0.25 -6.96 9.68 -15.06 -0.15 -7.11 16 9 H 0.08 2.13 7.86 -52.49 -0.41 1.72 16 10 C 0.00 0.03 5.06 -17.43 -0.09 -0.05 16 11 N -0.91 -27.33 10.67 55.49 0.59 -26.73 16 12 Si 0.91 22.74 29.58 -169.99 -5.03 17.71 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 N -0.57 -10.32 6.15 -6.54 -0.04 -10.36 16 17 H 0.41 6.06 8.96 -40.82 -0.37 5.70 16 18 C -0.06 -1.05 7.24 -81.60 -0.59 -1.64 16 19 C -0.07 -0.83 10.22 36.01 0.37 -0.46 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.06 0.80 7.17 -51.93 -0.37 0.43 16 23 H 0.08 1.65 8.03 -51.93 -0.42 1.23 16 24 H 0.05 0.95 7.86 -51.93 -0.41 0.55 16 25 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 26 H 0.05 1.32 7.21 -51.93 -0.37 0.95 16 27 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 28 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.86 7.18 -51.93 -0.37 0.49 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 264.86 15.07 3.99 3.99 Total: -1.00 -33.79 264.86 -6.81 -40.60 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.34 Total: -0.57 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -1.37 Total: 2.23 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.06 Total: -63.97 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.79 -6.81 -40.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600111511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.019 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds