Wall clock time and date at job start Sun Mar 29 2020 21:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34126 * 125.99043 * 2 1 4 4 C 1.30509 * 109.25802 * 179.97438 * 3 2 1 5 5 C 1.50694 * 125.64982 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47316 * 275.00428 * 5 4 3 7 7 C 1.46499 * 119.99857 * 269.99895 * 6 5 4 8 8 C 1.36940 * 120.00181 * 90.00109 * 6 5 4 9 9 H 1.07998 * 119.99944 * 20.37293 * 8 6 5 10 10 C 1.38810 * 120.00078 * 200.36902 * 8 6 5 11 11 N 1.31618 * 119.99981 * 14.98461 * 10 8 6 12 12 Si 1.86795 * 120.00142 * 194.97888 * 10 8 6 13 13 H 1.48502 * 109.46943 * 85.00414 * 12 10 8 14 14 H 1.48501 * 109.47545 * 205.00499 * 12 10 8 15 15 H 1.48500 * 109.47176 * 325.00864 * 12 10 8 16 16 N 1.35041 * 108.69689 * 0.02562 * 4 3 2 17 17 H 0.97002 * 126.39800 * 180.26458 * 16 4 3 18 18 C 1.34670 * 125.99180 * 179.97438 * 2 1 3 19 19 C 1.50702 * 126.59042 * 359.96725 * 18 2 1 20 20 H 1.09002 * 109.47127 * 270.00011 * 1 2 3 21 21 H 1.08996 * 109.46919 * 30.00151 * 1 2 3 22 22 H 1.08996 * 109.47114 * 149.99945 * 1 2 3 23 23 H 1.09003 * 109.47042 * 35.00550 * 5 4 3 24 24 H 1.08999 * 109.46748 * 155.00198 * 5 4 3 25 25 H 1.09003 * 109.46927 * 95.09964 * 7 6 5 26 26 H 1.09004 * 109.47549 * 215.09500 * 7 6 5 27 27 H 1.09004 * 109.47445 * 335.09563 * 7 6 5 28 28 H 0.96998 * 120.00222 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.46764 * 270.01871 * 19 18 2 30 30 H 1.09004 * 109.46851 * 30.01437 * 19 18 2 31 31 H 1.08996 * 109.47279 * 150.01278 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 0.0006 5 6 4.7386 1.6293 0.0002 6 7 5.0523 2.0219 -1.3759 7 6 5.9806 1.2170 -2.1737 8 6 4.4777 3.1413 -1.9165 9 1 4.0710 3.9051 -1.2704 10 6 4.4182 3.2942 -3.2948 11 7 4.6348 2.2614 -4.0815 12 14 4.0307 4.9656 -4.0333 13 1 5.2803 5.7606 -4.1419 14 1 3.4398 4.7854 -5.3837 15 1 3.0640 5.6800 -3.1612 16 7 3.5913 -0.6401 0.0004 17 1 4.3913 -1.1886 0.0043 18 6 2.2984 -1.0896 0.0005 19 6 1.8473 -2.5275 0.0018 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 4.5125 2.5183 0.5891 24 1 5.5948 1.1136 0.4350 25 1 5.4174 0.5089 -2.7817 26 1 6.5628 1.8707 -2.8232 27 1 6.6523 0.6724 -1.5101 28 1 4.5929 2.3682 -5.0447 29 1 1.7387 -2.8732 1.0298 30 1 0.8892 -2.6082 -0.5118 31 1 2.5875 -3.1410 -0.5116 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600111511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:04 Heat of formation + Delta-G solvation = 47.547541 kcal Electronic energy + Delta-G solvation = -13851.885713 eV Core-core repulsion = 11554.831650 eV Total energy + Delta-G solvation = -2297.054063 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.82639 -37.50740 -34.14002 -33.71915 -32.82455 -29.31318 -29.07865 -27.88982 -25.20872 -23.29627 -21.59678 -20.45137 -18.83392 -17.98520 -16.89538 -16.25576 -15.44611 -15.41255 -15.14185 -14.29895 -14.15664 -13.67234 -13.44997 -13.38407 -13.17218 -13.07184 -12.88052 -12.79351 -12.55801 -12.25100 -12.03612 -11.90491 -10.69849 -10.64876 -10.57456 -9.01011 -8.77091 -7.86144 -5.31599 1.22949 1.44772 1.46353 1.54685 2.26700 2.41293 2.54232 3.29268 3.76097 3.78769 4.18324 4.29191 4.43469 4.52931 4.60193 4.76501 4.76762 4.87132 4.93179 5.07664 5.13562 5.27006 5.28898 5.50007 5.59621 5.69708 6.08565 6.28188 6.73149 7.12015 7.45968 7.80749 8.20777 9.17671 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036385 B = 0.009517 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.368368 B = 2941.248988 C = 3243.176655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.047 4.047 3 N -0.529 5.529 4 C 0.195 3.805 5 C 0.222 3.778 6 N -0.600 5.600 7 C 0.175 3.825 8 C -0.250 4.250 9 H 0.069 0.931 10 C -0.054 4.054 11 N -0.939 5.939 12 Si 0.968 3.032 13 H -0.278 1.278 14 H -0.297 1.297 15 H -0.275 1.275 16 N -0.557 5.557 17 H 0.424 0.576 18 C -0.041 4.041 19 C -0.064 4.064 20 H 0.078 0.922 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.095 0.905 25 H -0.004 1.004 26 H 0.023 0.977 27 H 0.043 0.957 28 H 0.246 0.754 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 -9.487 8.938 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.176 4.176 3 N -0.251 5.251 4 C -0.072 4.072 5 C 0.093 3.907 6 N -0.322 5.322 7 C 0.031 3.969 8 C -0.381 4.381 9 H 0.086 0.914 10 C -0.249 4.249 11 N -0.586 5.586 12 Si 0.796 3.204 13 H -0.204 1.204 14 H -0.224 1.224 15 H -0.200 1.200 16 N -0.162 5.162 17 H 0.263 0.737 18 C -0.157 4.157 19 C -0.122 4.122 20 H 0.096 0.904 21 H 0.066 0.934 22 H 0.105 0.895 23 H 0.091 0.909 24 H 0.113 0.887 25 H 0.014 0.986 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.585 -8.647 8.761 12.578 hybrid contribution 0.335 -0.093 -0.961 1.022 sum -2.251 -8.740 7.800 11.929 Atomic orbital electron populations 1.20006 0.86543 1.02374 1.02473 1.21193 0.97883 0.88670 1.09819 1.70075 1.01636 1.32071 1.21270 1.25139 0.96538 0.82651 1.02890 1.19630 0.89589 0.94416 0.87051 1.44365 1.48779 1.27922 1.11116 1.20623 0.90406 0.93317 0.92585 1.19489 1.32999 0.95452 0.90146 0.91357 1.25733 1.01438 1.00627 0.97091 1.70250 1.56114 1.29519 1.02750 0.85266 0.78000 0.80076 0.77043 1.20399 1.22375 1.19976 1.43142 1.08429 1.07624 1.57031 0.73661 1.21573 0.83715 0.98583 1.11862 1.20267 1.02263 0.85976 1.03710 0.90375 0.93411 0.89484 0.90866 0.88736 0.98558 0.95836 0.93812 0.94480 0.89261 0.89293 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.22 71.23 0.73 -0.97 16 2 C -0.05 -1.84 7.09 41.39 0.29 -1.55 16 3 N -0.53 -24.99 11.25 -176.29 -1.98 -26.97 16 4 C 0.20 8.32 7.74 138.12 1.07 9.39 16 5 C 0.22 9.20 6.33 85.63 0.54 9.75 16 6 N -0.60 -30.57 2.91 -731.31 -2.13 -32.70 16 7 C 0.18 8.54 9.02 127.77 1.15 9.69 16 8 C -0.25 -14.41 9.68 84.03 0.81 -13.60 16 9 H 0.07 3.93 7.86 -2.91 -0.02 3.91 16 10 C -0.05 -3.19 5.06 84.86 0.43 -2.76 16 11 N -0.94 -57.63 10.67 21.65 0.23 -57.40 16 12 Si 0.97 47.50 29.58 68.60 2.03 49.53 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 15 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 16 N -0.56 -19.14 6.15 -174.60 -1.07 -20.21 16 17 H 0.42 11.43 8.96 -92.71 -0.83 10.59 16 18 C -0.04 -1.36 7.24 40.95 0.30 -1.06 16 19 C -0.06 -1.34 10.22 71.24 0.73 -0.62 16 20 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.09 2.08 7.17 -2.39 -0.02 2.07 16 23 H 0.07 3.06 8.03 -2.39 -0.02 3.04 16 24 H 0.09 3.07 7.86 -2.39 -0.02 3.06 16 25 H 0.00 -0.22 7.40 -2.39 -0.02 -0.23 16 26 H 0.02 1.23 7.21 -2.38 -0.02 1.21 16 27 H 0.04 1.69 7.84 -2.38 -0.02 1.67 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.66 7.18 -2.38 -0.02 1.64 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -74.45 264.86 3.42 -71.04 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.29 Total: 8.44 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.05 Total: 8.27 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -4.95 Total: -137.28 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -74.45 3.42 -71.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600111511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.583 kcal (2) G-P(sol) polarization free energy of solvation -74.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds