Wall clock time and date at job start Sun Mar 29 2020 22:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47599 * 2 1 4 4 C 1.36931 * 119.99910 * 269.58996 * 3 2 1 5 5 H 1.08006 * 120.00218 * 322.07305 * 4 3 2 6 6 C 1.38811 * 120.00156 * 142.08412 * 4 3 2 7 7 N 1.31625 * 120.00147 * 156.98359 * 6 4 3 8 8 Si 1.86796 * 119.99912 * 336.97702 * 6 4 3 9 9 H 1.48499 * 109.47100 * 95.70183 * 8 6 4 10 10 H 1.48500 * 109.47600 * 215.70440 * 8 6 4 11 11 H 1.48504 * 109.47080 * 335.70550 * 8 6 4 12 12 C 1.46499 * 119.99893 * 89.58017 * 3 2 1 13 13 C 1.50712 * 109.46635 * 90.00454 * 12 3 2 14 14 N 1.30495 * 125.64827 * 274.68660 * 13 12 3 15 15 C 1.34129 * 109.25496 * 180.26812 * 14 13 12 16 16 C 1.34667 * 108.02203 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.59425 * 179.97438 * 16 15 14 18 18 N 1.35042 * 125.64762 * 94.99937 * 13 12 3 19 19 H 0.97002 * 126.39776 * 359.75709 * 18 13 12 20 20 H 1.09008 * 109.47051 * 299.99846 * 1 2 3 21 21 H 1.08996 * 109.47314 * 59.99546 * 1 2 3 22 22 H 1.09003 * 109.47708 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46583 * 239.99906 * 2 1 3 24 24 H 1.09006 * 109.47367 * 120.00623 * 2 1 3 25 25 H 0.97004 * 119.99355 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47568 * 330.00878 * 12 3 2 27 27 H 1.08998 * 109.47145 * 209.99941 * 12 3 2 28 28 H 1.07998 * 125.98859 * 180.02562 * 15 14 13 29 29 H 1.09004 * 109.46555 * 270.04329 * 17 16 15 30 30 H 1.09002 * 109.46950 * 30.04083 * 17 16 15 31 31 H 1.09000 * 109.47264 * 150.04546 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2547 2.0238 -1.1858 5 1 2.6793 1.4823 -2.0183 6 6 1.9486 3.3713 -1.3181 7 7 2.5558 4.0974 -2.2327 8 14 0.6751 4.1541 -0.1980 9 1 1.3575 4.8009 0.9514 10 1 -0.0912 5.1748 -0.9570 11 1 -0.2536 3.1087 0.3022 12 6 2.2538 2.0748 1.2687 13 6 3.6742 1.8390 1.7140 14 7 4.0963 0.8100 2.3966 15 6 5.4131 0.9364 2.6184 16 6 5.8224 2.0876 2.0522 17 6 7.2248 2.6393 2.0509 18 7 4.7197 2.6604 1.4778 19 1 4.6940 3.4999 0.9925 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 2.3415 5.0390 -2.3253 26 1 1.5679 1.6926 2.0246 27 1 2.0879 3.1437 1.1346 28 1 6.0360 0.2373 3.1567 29 1 7.3671 3.2721 2.9269 30 1 7.9390 1.8162 2.0773 31 1 7.3826 3.2285 1.1475 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600114834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:18 Heat of formation + Delta-G solvation = 70.785589 kcal Electronic energy + Delta-G solvation = -14033.756084 eV Core-core repulsion = 11737.709697 eV Total energy + Delta-G solvation = -2296.046386 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36290 -36.22387 -32.23901 -31.94802 -31.43075 -29.68846 -27.31742 -24.56544 -23.75270 -20.64785 -20.30320 -19.73058 -17.27881 -16.34981 -15.22737 -14.90585 -14.10952 -13.74964 -13.44943 -13.10244 -12.96010 -12.51920 -12.38247 -12.18690 -12.04531 -11.73133 -11.33514 -10.88072 -10.57853 -10.18336 -9.95602 -9.69634 -9.34698 -9.31107 -8.65147 -7.61121 -6.98167 -6.13144 -3.53683 2.65439 3.17182 3.38007 3.44472 3.73201 3.81908 4.39182 5.03830 5.21152 5.23512 5.41407 5.44751 5.71863 5.86866 5.95395 6.02534 6.02846 6.23409 6.34071 6.42987 6.44688 6.62748 6.85512 6.89754 7.11503 7.38391 7.91874 8.07180 8.29543 8.78896 8.86346 9.57453 10.01130 11.02048 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.012852 C = 0.010306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.275406 B = 2178.153048 C = 2716.201868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.145 3.855 3 N -0.592 5.592 4 C -0.265 4.265 5 H 0.079 0.921 6 C 0.034 3.966 7 N -0.896 5.896 8 Si 0.866 3.134 9 H -0.287 1.287 10 H -0.298 1.298 11 H -0.261 1.261 12 C 0.211 3.789 13 C 0.224 3.776 14 N -0.503 5.503 15 C -0.034 4.034 16 C -0.051 4.051 17 C -0.071 4.071 18 N -0.552 5.552 19 H 0.418 0.582 20 H 0.042 0.958 21 H 0.054 0.946 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.264 0.736 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.158 0.842 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -2.048 7.854 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.019 3.981 3 N -0.313 5.313 4 C -0.394 4.394 5 H 0.097 0.903 6 C -0.166 4.166 7 N -0.537 5.537 8 Si 0.696 3.304 9 H -0.215 1.215 10 H -0.226 1.226 11 H -0.185 1.185 12 C 0.082 3.918 13 C -0.043 4.043 14 N -0.223 5.223 15 C -0.183 4.183 16 C -0.167 4.167 17 C -0.129 4.129 18 N -0.154 5.154 19 H 0.256 0.744 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.176 0.824 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.055 -2.604 8.014 8.963 hybrid contribution -0.074 1.683 -0.066 1.686 sum 2.981 -0.922 7.947 8.538 Atomic orbital electron populations 1.22305 0.99404 0.99380 1.01554 1.20909 0.91662 0.85727 0.99789 1.44136 1.74264 1.11848 1.01054 1.18842 1.36426 0.93351 0.90760 0.90340 1.25502 0.97717 0.96793 0.96622 1.69898 1.40632 1.07018 1.36170 0.87090 0.84398 0.79098 0.79829 1.21534 1.22553 1.18505 1.19795 0.85453 0.97523 0.88994 1.24960 0.93757 0.87924 0.97667 1.70194 1.10830 1.22861 1.18388 1.21935 0.92664 0.97344 1.06340 1.21154 0.90437 0.98746 1.06370 1.20110 0.89944 1.00944 1.01871 1.43265 1.07968 1.21391 1.42776 0.74410 0.93924 0.92647 0.94057 0.93154 0.93235 0.92616 0.90833 0.91681 0.82417 0.91722 0.90599 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.24 37.16 0.38 -2.74 16 2 C 0.14 3.01 6.39 -4.05 -0.03 2.98 16 3 N -0.59 -14.03 2.05 -174.60 -0.36 -14.38 16 4 C -0.26 -7.18 9.90 -15.06 -0.15 -7.33 16 5 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 6 C 0.03 0.94 5.29 -17.43 -0.09 0.85 16 7 N -0.90 -26.00 13.97 55.49 0.78 -25.23 16 8 Si 0.87 20.95 25.10 -169.99 -4.27 16.69 16 9 H -0.29 -6.66 6.68 56.52 0.38 -6.28 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.21 4.67 5.14 -5.19 -0.03 4.64 16 13 C 0.22 4.84 7.74 -155.41 -1.20 3.63 16 14 N -0.50 -10.70 11.25 -10.81 -0.12 -10.83 16 15 C -0.03 -0.63 11.79 -17.81 -0.21 -0.84 16 16 C -0.05 -0.88 7.24 -81.60 -0.59 -1.47 16 17 C -0.07 -0.88 10.44 36.01 0.38 -0.51 16 18 N -0.55 -10.85 6.15 -6.54 -0.04 -10.89 16 19 H 0.42 7.89 8.96 -40.82 -0.37 7.52 16 20 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 1.05 8.04 -51.92 -0.42 0.64 16 24 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.07 1.51 8.07 -51.93 -0.42 1.09 16 27 H 0.07 1.49 3.38 -51.93 -0.18 1.32 16 28 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -30.35 263.37 -5.92 -36.28 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.34 Total: 5.17 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.54 Total: -0.78 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.26 Total: -61.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.27 Total: 16.69 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.35 -5.92 -36.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600114834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.062 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds