Wall clock time and date at job start Sun Mar 29 2020 22:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47599 * 2 1 4 4 C 1.36931 * 119.99910 * 269.58996 * 3 2 1 5 5 H 1.08006 * 120.00218 * 322.07305 * 4 3 2 6 6 C 1.38811 * 120.00156 * 142.08412 * 4 3 2 7 7 N 1.31625 * 120.00147 * 156.98359 * 6 4 3 8 8 Si 1.86796 * 119.99912 * 336.97702 * 6 4 3 9 9 H 1.48499 * 109.47100 * 95.70183 * 8 6 4 10 10 H 1.48500 * 109.47600 * 215.70440 * 8 6 4 11 11 H 1.48504 * 109.47080 * 335.70550 * 8 6 4 12 12 C 1.46499 * 119.99893 * 89.58017 * 3 2 1 13 13 C 1.50712 * 109.46635 * 90.00454 * 12 3 2 14 14 N 1.30495 * 125.64827 * 274.68660 * 13 12 3 15 15 C 1.34129 * 109.25496 * 180.26812 * 14 13 12 16 16 C 1.34667 * 108.02203 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.59425 * 179.97438 * 16 15 14 18 18 N 1.35042 * 125.64762 * 94.99937 * 13 12 3 19 19 H 0.97002 * 126.39776 * 359.75709 * 18 13 12 20 20 H 1.09008 * 109.47051 * 299.99846 * 1 2 3 21 21 H 1.08996 * 109.47314 * 59.99546 * 1 2 3 22 22 H 1.09003 * 109.47708 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46583 * 239.99906 * 2 1 3 24 24 H 1.09006 * 109.47367 * 120.00623 * 2 1 3 25 25 H 0.97004 * 119.99355 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47568 * 330.00878 * 12 3 2 27 27 H 1.08998 * 109.47145 * 209.99941 * 12 3 2 28 28 H 1.07998 * 125.98859 * 180.02562 * 15 14 13 29 29 H 1.09004 * 109.46555 * 270.04329 * 17 16 15 30 30 H 1.09002 * 109.46950 * 30.04083 * 17 16 15 31 31 H 1.09000 * 109.47264 * 150.04546 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2547 2.0238 -1.1858 5 1 2.6793 1.4823 -2.0183 6 6 1.9486 3.3713 -1.3181 7 7 2.5558 4.0974 -2.2327 8 14 0.6751 4.1541 -0.1980 9 1 1.3575 4.8009 0.9514 10 1 -0.0912 5.1748 -0.9570 11 1 -0.2536 3.1087 0.3022 12 6 2.2538 2.0748 1.2687 13 6 3.6742 1.8390 1.7140 14 7 4.0963 0.8100 2.3966 15 6 5.4131 0.9364 2.6184 16 6 5.8224 2.0876 2.0522 17 6 7.2248 2.6393 2.0509 18 7 4.7197 2.6604 1.4778 19 1 4.6940 3.4999 0.9925 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 2.3415 5.0390 -2.3253 26 1 1.5679 1.6926 2.0246 27 1 2.0879 3.1437 1.1346 28 1 6.0360 0.2373 3.1567 29 1 7.3671 3.2721 2.9269 30 1 7.9390 1.8162 2.0773 31 1 7.3826 3.2285 1.1475 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600114834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:17 Heat of formation + Delta-G solvation = 51.040485 kcal Electronic energy + Delta-G solvation = -14034.612296 eV Core-core repulsion = 11737.709697 eV Total energy + Delta-G solvation = -2296.902598 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.85596 -38.03454 -34.07604 -33.56953 -32.91232 -31.25285 -28.97186 -26.14711 -25.49402 -22.30028 -21.82291 -21.35911 -19.11347 -18.03225 -17.10745 -16.54370 -15.67723 -15.39793 -15.09537 -14.80428 -14.38792 -14.09667 -13.88397 -13.52313 -13.37483 -13.16824 -13.08323 -12.65476 -12.34238 -12.10806 -11.65803 -11.59895 -10.87760 -10.84971 -10.69691 -9.06980 -8.88783 -8.24948 -5.64384 1.17612 1.26686 1.42018 1.52928 2.20390 2.35818 2.37209 3.04352 3.41367 3.69629 4.12254 4.22406 4.37697 4.42042 4.50423 4.62458 4.79672 4.80065 4.82961 4.96803 5.08221 5.08921 5.23849 5.49277 5.53743 5.88298 5.97818 6.14126 6.54637 6.89673 7.26808 7.53785 7.99851 8.94140 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.012852 C = 0.010306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.275406 B = 2178.153048 C = 2716.201868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 N -0.601 5.601 4 C -0.258 4.258 5 H 0.035 0.965 6 C -0.008 4.008 7 N -0.940 5.940 8 Si 0.927 3.073 9 H -0.270 1.270 10 H -0.306 1.306 11 H -0.251 1.251 12 C 0.213 3.787 13 C 0.193 3.807 14 N -0.518 5.518 15 C -0.056 4.056 16 C -0.039 4.039 17 C -0.068 4.068 18 N -0.558 5.558 19 H 0.419 0.581 20 H 0.046 0.954 21 H 0.036 0.964 22 H 0.074 0.926 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.265 0.735 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.188 0.812 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -2.230 9.736 10.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 N -0.324 5.324 4 C -0.388 4.388 5 H 0.053 0.947 6 C -0.205 4.205 7 N -0.583 5.583 8 Si 0.755 3.245 9 H -0.197 1.197 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.085 3.915 13 C -0.074 4.074 14 N -0.239 5.239 15 C -0.203 4.203 16 C -0.155 4.155 17 C -0.126 4.126 18 N -0.161 5.161 19 H 0.256 0.744 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.092 0.908 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.205 0.795 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.339 -2.814 9.928 10.846 hybrid contribution -0.019 1.656 -0.641 1.776 sum 3.321 -1.158 9.287 9.931 Atomic orbital electron populations 1.22178 0.97326 1.01355 1.00760 1.20990 0.93280 0.84277 0.99684 1.44207 1.74966 1.12637 1.00569 1.18572 1.35683 0.93372 0.91170 0.94699 1.25969 0.99027 0.97163 0.98376 1.70005 1.42210 1.07436 1.38638 0.86105 0.81770 0.78196 0.78442 1.19726 1.23408 1.17469 1.19728 0.86578 0.96794 0.88397 1.24669 0.93958 0.89102 0.99680 1.70124 1.12562 1.22802 1.18403 1.22518 0.92018 0.98575 1.07238 1.21957 0.91611 0.97988 1.03969 1.20293 0.87195 1.02106 1.03026 1.43377 1.08486 1.21373 1.42844 0.74372 0.93498 0.94494 0.90753 0.94216 0.92330 0.92560 0.89223 0.92594 0.79451 0.89427 0.88278 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 10.24 71.98 0.74 -4.84 16 2 C 0.14 5.82 6.39 86.38 0.55 6.38 16 3 N -0.60 -28.41 2.05 -706.32 -1.45 -29.86 16 4 C -0.26 -14.31 9.90 84.03 0.83 -13.48 16 5 H 0.04 2.20 8.06 -2.91 -0.02 2.18 16 6 C -0.01 -0.44 5.29 84.86 0.45 0.01 16 7 N -0.94 -55.70 13.97 21.65 0.30 -55.40 16 8 Si 0.93 43.21 25.10 68.60 1.72 44.94 16 9 H -0.27 -11.77 6.68 99.48 0.66 -11.10 16 10 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 11 H -0.25 -11.21 7.11 99.48 0.71 -10.51 16 12 C 0.21 9.20 5.14 85.64 0.44 9.64 16 13 C 0.19 8.13 7.74 138.13 1.07 9.20 16 14 N -0.52 -21.34 11.25 -188.12 -2.12 -23.46 16 15 C -0.06 -1.93 11.79 83.52 0.98 -0.94 16 16 C -0.04 -1.26 7.24 40.95 0.30 -0.96 16 17 C -0.07 -1.48 10.44 71.24 0.74 -0.74 16 18 N -0.56 -21.36 6.15 -174.59 -1.07 -22.44 16 19 H 0.42 15.59 8.96 -92.71 -0.83 14.76 16 20 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.04 1.67 8.04 -2.38 -0.02 1.66 16 24 H 0.06 2.28 8.08 -2.38 -0.02 2.26 16 25 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.09 3.51 8.07 -2.39 -0.02 3.49 16 27 H 0.06 2.49 3.38 -2.39 -0.01 2.48 16 28 H 0.19 5.09 8.06 -2.91 -0.02 5.07 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.44 263.37 3.74 -61.71 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.25 Total: 20.24 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 6.10 Total: 4.27 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -4.34 Total: -131.15 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.72 Total: 44.94 kcal Total: -65.44 3.74 -61.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600114834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.747 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds