Wall clock time and date at job start Sun Mar 29 2020 21:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47383 * 2 1 4 4 H 1.09001 * 109.47095 * 305.00315 * 3 2 1 5 5 C 1.53003 * 109.46598 * 64.99832 * 3 2 1 6 6 N 1.46495 * 109.47334 * 184.99874 * 3 2 1 7 7 C 1.35313 * 125.86749 * 275.00336 * 6 3 2 8 8 C 1.35355 * 106.17637 * 179.97438 * 7 6 3 9 9 C 1.50694 * 126.75481 * 179.73261 * 8 7 6 10 10 C 1.50705 * 109.47243 * 125.00249 * 9 8 7 11 11 H 1.07999 * 119.99383 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00267 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00198 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99864 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47298 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47092 * 119.99702 * 14 12 10 17 17 H 1.48497 * 109.47441 * 239.99531 * 14 12 10 18 18 N 1.33770 * 106.49598 * 0.02562 * 8 7 6 19 19 N 1.28636 * 108.88653 * 359.97438 * 18 8 7 20 20 H 1.09007 * 109.47283 * 59.99707 * 1 2 3 21 21 H 1.09001 * 109.47727 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47169 * 300.00086 * 1 2 3 23 23 H 1.09003 * 109.47169 * 239.99914 * 2 1 3 24 24 H 1.08998 * 109.46701 * 120.00400 * 2 1 3 25 25 H 1.09010 * 109.46600 * 180.02562 * 5 3 2 26 26 H 1.08997 * 109.47227 * 299.99855 * 5 3 2 27 27 H 1.09001 * 109.47003 * 60.00426 * 5 3 2 28 28 H 1.07998 * 126.91441 * 0.02562 * 7 6 3 29 29 H 1.08990 * 109.47690 * 245.00694 * 9 8 7 30 30 H 1.09005 * 109.46952 * 5.00711 * 9 8 7 31 31 H 0.96993 * 120.00335 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1264 1.3074 6 7 3.5000 1.4442 -0.1203 7 6 4.3798 1.3178 0.9000 8 6 5.6126 1.3717 0.3437 9 6 6.9323 1.2819 1.0657 10 6 7.7578 0.1721 0.4672 11 1 7.3660 -0.4096 -0.3541 12 6 9.0130 -0.1006 0.9681 13 7 9.4903 0.6081 1.9679 14 14 10.0364 -1.4757 0.2257 15 1 9.2784 -2.1158 -0.8792 16 1 11.3066 -0.9171 -0.3035 17 1 10.3378 -2.4876 1.2698 18 7 5.4291 1.5270 -0.9722 19 7 4.1665 1.5660 -1.2148 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 1.9982 3.1543 1.3072 26 1 0.5489 2.1252 1.3969 27 1 2.0698 1.5874 2.1492 28 1 4.1455 1.1973 1.9473 29 1 7.4664 2.2266 0.9654 30 1 6.7557 1.0746 2.1212 31 1 10.3735 0.4166 2.3201 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603195641.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:21 Heat of formation + Delta-G solvation = 77.867203 kcal Electronic energy + Delta-G solvation = -13453.750460 eV Core-core repulsion = 11158.011156 eV Total energy + Delta-G solvation = -2295.739304 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.48933 -36.93214 -33.50210 -32.13464 -31.03441 -29.19273 -27.52888 -25.12232 -23.34799 -22.29944 -20.37190 -19.96277 -16.85082 -16.20881 -15.69175 -15.13752 -14.47742 -14.27580 -13.67474 -13.31235 -12.81333 -12.48067 -12.20388 -12.17439 -11.86322 -11.63138 -11.24684 -11.06062 -10.91317 -10.67725 -10.61386 -10.01523 -9.65982 -9.37272 -9.21228 -8.40529 -8.07578 -5.96428 -3.96657 2.29698 2.83497 3.37127 3.43762 3.49212 3.57511 4.36134 4.53966 4.54535 4.81225 4.94724 5.03430 5.18630 5.33644 5.40510 5.44630 5.57356 5.65244 5.74643 5.82992 5.93100 6.02050 6.16261 6.42801 7.19055 7.28234 7.56787 7.66449 8.01768 8.40992 9.07231 9.38214 9.66098 11.14828 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051833 B = 0.006674 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.061917 B = 4194.210360 C = 4317.546409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.146 3.854 4 H 0.105 0.895 5 C -0.165 4.165 6 N -0.299 5.299 7 C -0.081 4.081 8 C 0.033 3.967 9 C 0.092 3.908 10 C -0.501 4.501 11 H 0.059 0.941 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.285 1.285 18 N -0.264 5.264 19 N -0.113 5.113 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.178 0.822 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.775 0.769 0.622 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.043 3.957 4 H 0.124 0.876 5 C -0.223 4.223 6 N -0.095 5.095 7 C -0.229 4.229 8 C -0.105 4.105 9 C 0.053 3.947 10 C -0.540 4.540 11 H 0.077 0.923 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.211 1.211 18 N -0.131 5.131 19 N -0.091 5.091 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.195 0.805 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.720 0.974 -0.812 17.766 hybrid contribution 0.549 -0.921 0.877 1.385 sum -17.172 0.054 0.065 17.172 Atomic orbital electron populations 1.21777 0.94165 1.02467 1.02220 1.21945 0.96789 0.94836 1.03904 1.21522 0.74915 0.98333 1.00908 0.87648 1.22221 1.02756 1.01413 0.95892 1.47350 1.07798 1.48413 1.05921 1.23241 0.89728 1.14043 0.95936 1.23006 0.97237 1.00024 0.90184 1.17721 0.84680 0.98355 0.93939 1.21094 1.00184 1.15763 1.16952 0.92266 1.24972 0.97635 0.96730 0.95116 1.69955 1.18017 1.40276 1.25637 0.86463 0.80170 0.81891 0.79104 1.19722 1.20933 1.21117 1.75057 1.05229 1.16737 1.16053 1.78180 1.00132 1.20837 1.09914 0.92287 0.91969 0.92059 0.90778 0.90791 0.91355 0.89846 0.91055 0.80458 0.94354 0.94614 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.14 -1.40 5.73 -26.73 -0.15 -1.55 16 3 C 0.15 1.68 3.32 -67.93 -0.23 1.46 16 4 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.16 -1.45 8.59 37.16 0.32 -1.13 16 6 N -0.30 -5.16 3.25 -54.76 -0.18 -5.34 16 7 C -0.08 -1.52 10.61 -17.05 -0.18 -1.70 16 8 C 0.03 0.78 6.44 -82.78 -0.53 0.25 16 9 C 0.09 2.45 5.55 -29.04 -0.16 2.29 16 10 C -0.50 -14.74 9.09 -34.44 -0.31 -15.05 16 11 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 14 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 15 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 N -0.26 -6.52 12.40 33.29 0.41 -6.11 16 19 N -0.11 -2.39 13.17 60.35 0.79 -1.60 16 20 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 26 H 0.08 0.51 6.56 -51.93 -0.34 0.17 16 27 H 0.07 0.63 7.17 -51.93 -0.37 0.25 16 28 H 0.18 2.70 7.30 -52.49 -0.38 2.32 16 29 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -33.41 266.18 -4.59 -38.00 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -4.36 Total: -5.48 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.99 Total: -14.60 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 1.77 Total: -39.29 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.41 -4.59 -38.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603195641.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.867 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds