Wall clock time and date at job start Sun Mar 29 2020 21:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47383 * 2 1 4 4 H 1.09001 * 109.47095 * 305.00315 * 3 2 1 5 5 C 1.53003 * 109.46598 * 64.99832 * 3 2 1 6 6 N 1.46495 * 109.47334 * 184.99874 * 3 2 1 7 7 C 1.35313 * 125.86749 * 275.00336 * 6 3 2 8 8 C 1.35355 * 106.17637 * 179.97438 * 7 6 3 9 9 C 1.50694 * 126.75481 * 179.73261 * 8 7 6 10 10 C 1.50705 * 109.47243 * 125.00249 * 9 8 7 11 11 H 1.07999 * 119.99383 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00267 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00198 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99864 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47298 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47092 * 119.99702 * 14 12 10 17 17 H 1.48497 * 109.47441 * 239.99531 * 14 12 10 18 18 N 1.33770 * 106.49598 * 0.02562 * 8 7 6 19 19 N 1.28636 * 108.88653 * 359.97438 * 18 8 7 20 20 H 1.09007 * 109.47283 * 59.99707 * 1 2 3 21 21 H 1.09001 * 109.47727 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47169 * 300.00086 * 1 2 3 23 23 H 1.09003 * 109.47169 * 239.99914 * 2 1 3 24 24 H 1.08998 * 109.46701 * 120.00400 * 2 1 3 25 25 H 1.09010 * 109.46600 * 180.02562 * 5 3 2 26 26 H 1.08997 * 109.47227 * 299.99855 * 5 3 2 27 27 H 1.09001 * 109.47003 * 60.00426 * 5 3 2 28 28 H 1.07998 * 126.91441 * 0.02562 * 7 6 3 29 29 H 1.08990 * 109.47690 * 245.00694 * 9 8 7 30 30 H 1.09005 * 109.46952 * 5.00711 * 9 8 7 31 31 H 0.96993 * 120.00335 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1264 1.3074 6 7 3.5000 1.4442 -0.1203 7 6 4.3798 1.3178 0.9000 8 6 5.6126 1.3717 0.3437 9 6 6.9323 1.2819 1.0657 10 6 7.7578 0.1721 0.4672 11 1 7.3660 -0.4096 -0.3541 12 6 9.0130 -0.1006 0.9681 13 7 9.4903 0.6081 1.9679 14 14 10.0364 -1.4757 0.2257 15 1 9.2784 -2.1158 -0.8792 16 1 11.3066 -0.9171 -0.3035 17 1 10.3378 -2.4876 1.2698 18 7 5.4291 1.5270 -0.9722 19 7 4.1665 1.5660 -1.2148 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 1.9982 3.1543 1.3072 26 1 0.5489 2.1252 1.3969 27 1 2.0698 1.5874 2.1492 28 1 4.1455 1.1973 1.9473 29 1 7.4664 2.2266 0.9654 30 1 6.7557 1.0746 2.1212 31 1 10.3735 0.4166 2.3201 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603195641.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:20 Heat of formation + Delta-G solvation = 55.444711 kcal Electronic energy + Delta-G solvation = -13454.722772 eV Core-core repulsion = 11158.011156 eV Total energy + Delta-G solvation = -2296.711616 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.07813 -37.97414 -35.54406 -33.59487 -32.77354 -30.08777 -29.47768 -26.10689 -25.40402 -23.47477 -22.06084 -21.17462 -18.50171 -18.06635 -17.11101 -16.55774 -16.00720 -15.69593 -14.73276 -14.52223 -14.26687 -14.06473 -13.74941 -13.18119 -12.95131 -12.86662 -12.69384 -12.57139 -12.42021 -12.15545 -11.88590 -11.77196 -11.64046 -11.35149 -10.77908 -10.58855 -9.86333 -8.19411 -6.28182 0.76822 1.39378 1.40949 1.53853 1.58531 1.76538 2.44250 3.13210 3.44001 3.69091 3.73290 3.98957 4.19446 4.30697 4.40236 4.46050 4.60557 4.71775 4.81220 4.92283 5.01767 5.08746 5.20993 5.31206 5.40409 5.44654 5.54660 5.76366 5.89329 6.22177 6.80073 7.38590 7.72127 8.91860 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051833 B = 0.006674 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.061917 B = 4194.210360 C = 4317.546409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.131 3.869 4 H 0.117 0.883 5 C -0.160 4.160 6 N -0.279 5.279 7 C -0.051 4.051 8 C -0.009 4.009 9 C 0.102 3.898 10 C -0.524 4.524 11 H 0.042 0.958 12 C 0.009 3.991 13 N -0.927 5.927 14 Si 0.963 3.037 15 H -0.275 1.275 16 H -0.276 1.276 17 H -0.269 1.269 18 N -0.312 5.312 19 N -0.126 5.126 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.218 0.782 29 H 0.008 0.992 30 H 0.034 0.966 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.758 0.108 1.369 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.032 3.968 4 H 0.135 0.865 5 C -0.218 4.218 6 N -0.075 5.075 7 C -0.201 4.201 8 C -0.147 4.147 9 C 0.064 3.936 10 C -0.562 4.562 11 H 0.061 0.939 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.788 3.212 15 H -0.200 1.200 16 H -0.201 1.201 17 H -0.195 1.195 18 N -0.178 5.178 19 N -0.104 5.104 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.094 0.906 28 H 0.235 0.765 29 H 0.026 0.974 30 H 0.052 0.948 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.740 0.320 -0.080 19.743 hybrid contribution 1.022 -0.687 0.662 1.398 sum -18.718 -0.367 0.582 18.731 Atomic orbital electron populations 1.21765 0.91251 1.03355 1.03592 1.21935 0.99157 0.93311 1.02665 1.22192 0.71323 0.99989 1.03332 0.86506 1.22276 1.05066 1.00566 0.93914 1.47864 1.09825 1.45312 1.04480 1.23572 0.88212 1.10733 0.97585 1.22687 0.97778 1.03716 0.90546 1.17388 0.86100 0.96081 0.94072 1.21297 1.01319 1.16682 1.16922 0.93929 1.25790 0.98605 0.99110 0.95423 1.70042 1.18635 1.41540 1.26486 0.85433 0.78348 0.79008 0.78442 1.20000 1.20116 1.19455 1.74961 1.07153 1.18679 1.17003 1.78046 0.99309 1.21684 1.11356 0.91603 0.91410 0.89983 0.93203 0.90937 0.91906 0.86307 0.90585 0.76537 0.97401 0.94761 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.67 71.98 0.70 -0.82 16 2 C -0.13 -2.39 5.73 30.59 0.18 -2.21 16 3 C 0.13 2.69 3.32 44.99 0.15 2.84 16 4 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 5 C -0.16 -2.20 8.59 71.98 0.62 -1.58 16 6 N -0.28 -9.28 3.25 -327.17 -1.06 -10.34 16 7 C -0.05 -1.84 10.61 83.49 0.89 -0.96 16 8 C -0.01 -0.42 6.44 41.60 0.27 -0.16 16 9 C 0.10 5.67 5.55 29.10 0.16 5.83 16 10 C -0.52 -31.68 9.09 25.60 0.23 -31.45 16 11 H 0.04 2.66 7.74 -2.91 -0.02 2.63 16 12 C 0.01 0.52 5.46 84.65 0.46 0.98 16 13 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 14 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 N -0.31 -15.86 12.40 -48.60 -0.60 -16.46 16 19 N -0.13 -5.38 13.17 37.02 0.49 -4.89 16 20 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 21 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.08 0.56 6.56 -2.39 -0.02 0.55 16 23 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.12 0.84 6.56 -2.39 -0.02 0.83 16 27 H 0.08 1.01 7.17 -2.39 -0.02 0.99 16 28 H 0.22 5.97 7.30 -2.91 -0.02 5.95 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.03 1.85 8.12 -2.38 -0.02 1.83 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -74.51 266.18 5.88 -68.63 By element: Atomic # 1 Polarization: -2.88 SS G_CDS: 1.10 Total: -1.78 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.65 Total: -27.52 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -0.89 Total: -87.60 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -74.51 5.88 -68.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603195641.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.075 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds