Wall clock time and date at job start Sun Mar 29 2020 22:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.46822 * 2 1 4 4 C 1.36934 * 120.00191 * 94.61006 * 3 2 1 5 5 H 1.07997 * 120.00266 * 39.24079 * 4 3 2 6 6 C 1.38816 * 120.00181 * 219.52264 * 4 3 2 7 7 N 1.31621 * 120.00223 * 210.30390 * 6 4 3 8 8 Si 1.86804 * 119.99913 * 30.29669 * 6 4 3 9 9 H 1.48497 * 109.47122 * 85.90864 * 8 6 4 10 10 H 1.48493 * 109.47122 * 205.91016 * 8 6 4 11 11 H 1.48501 * 109.47231 * 325.90917 * 8 6 4 12 12 C 1.46506 * 120.00046 * 274.60372 * 3 2 1 13 13 C 1.50704 * 109.46947 * 275.29916 * 12 3 2 14 14 N 1.30505 * 125.64655 * 90.02796 * 13 12 3 15 15 C 1.34123 * 109.25339 * 179.97438 * 14 13 12 16 16 C 1.34668 * 108.02425 * 359.97438 * 15 14 13 17 17 N 1.35040 * 125.65142 * 269.71694 * 13 12 3 18 18 C 1.46498 * 126.39711 * 0.02562 * 17 13 12 19 19 H 1.09004 * 109.47227 * 184.92933 * 1 2 3 20 20 H 1.09003 * 109.47274 * 304.92944 * 1 2 3 21 21 H 1.09000 * 109.47131 * 64.93123 * 1 2 3 22 22 H 1.09002 * 109.47325 * 239.99970 * 2 1 3 23 23 H 1.08999 * 109.47435 * 119.99811 * 2 1 3 24 24 H 0.96998 * 120.00029 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.47063 * 35.29815 * 12 3 2 26 26 H 1.09002 * 109.46934 * 155.30170 * 12 3 2 27 27 H 1.08004 * 125.99127 * 180.02562 * 15 14 13 28 28 H 1.08000 * 126.59780 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47080 * 90.00284 * 18 17 13 30 30 H 1.08998 * 109.47110 * 210.00034 * 18 17 13 31 31 H 1.08997 * 109.47595 * 330.00035 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3363 1.9950 1.1820 5 1 2.8361 1.4394 1.9617 6 6 2.0111 3.3298 1.3805 7 7 2.7627 4.0820 2.1562 8 14 0.5068 4.0586 0.5465 9 1 -0.6935 3.8090 1.3845 10 1 0.6956 5.5215 0.3756 11 1 0.3223 3.4246 -0.7836 12 6 2.1663 2.1058 -1.2647 13 6 3.5039 1.7788 -1.8772 14 7 3.7420 0.7985 -2.7052 15 6 5.0398 0.8107 -3.0435 16 6 5.6282 1.8378 -2.4012 17 7 4.6533 2.4551 -1.6649 18 6 4.8252 3.6287 -0.8050 19 1 -0.3634 -1.0239 0.0883 20 1 -0.3634 0.5884 0.8425 21 1 -0.3633 0.4354 -0.9309 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.5352 5.0147 2.2951 25 1 1.3712 1.8091 -1.9486 26 1 2.1043 3.1780 -1.0785 27 1 5.5275 0.1187 -3.7141 28 1 6.6685 2.1222 -2.4589 29 1 5.0825 3.3054 0.2037 30 1 5.6247 4.2550 -1.2007 31 1 3.8966 4.1987 -0.7781 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604557789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:16 Heat of formation + Delta-G solvation = 68.555920 kcal Electronic energy + Delta-G solvation = -14346.187429 eV Core-core repulsion = 12050.044357 eV Total energy + Delta-G solvation = -2296.143072 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.80122 -37.95239 -34.75963 -33.98697 -32.22017 -30.29018 -27.94866 -27.10451 -25.54113 -22.21490 -22.08349 -20.79053 -18.84155 -17.79711 -17.02552 -16.62078 -15.89675 -15.31095 -15.25307 -14.92032 -14.37777 -14.04229 -13.90736 -13.63186 -13.38481 -13.23189 -12.91484 -12.66612 -12.29920 -12.20191 -11.60835 -11.50631 -10.83749 -10.58481 -10.40144 -9.18645 -8.81865 -8.24142 -5.55914 1.25036 1.35754 1.47182 1.52357 2.12352 2.27843 2.43700 3.04017 3.48741 3.78972 4.03792 4.07603 4.37788 4.40654 4.47474 4.61565 4.71801 4.81594 4.83018 4.88066 4.94766 5.09213 5.23618 5.52409 5.59095 5.92126 6.03019 6.20383 6.38794 6.96084 7.33331 7.59917 8.09465 8.94201 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.015168 C = 0.011573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.529058 B = 1845.580961 C = 2418.801077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 N -0.599 5.599 4 C -0.268 4.268 5 H 0.034 0.966 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.896 3.104 9 H -0.293 1.293 10 H -0.293 1.293 11 H -0.242 1.242 12 C 0.226 3.774 13 C 0.184 3.816 14 N -0.527 5.527 15 C -0.056 4.056 16 C -0.067 4.067 17 N -0.452 5.452 18 C 0.091 3.909 19 H 0.072 0.928 20 H 0.037 0.963 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.266 0.734 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.190 0.810 28 H 0.205 0.795 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -1.389 -8.238 8.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 N -0.322 5.322 4 C -0.397 4.397 5 H 0.051 0.949 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.722 3.278 9 H -0.221 1.221 10 H -0.219 1.219 11 H -0.166 1.166 12 C 0.098 3.902 13 C -0.081 4.081 14 N -0.248 5.248 15 C -0.205 4.205 16 C -0.201 4.201 17 N -0.133 5.133 18 C -0.051 4.051 19 H 0.091 0.909 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.207 0.793 28 H 0.222 0.778 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.969 -1.660 -8.321 8.710 hybrid contribution -0.007 1.101 0.522 1.218 sum 1.961 -0.559 -7.799 8.061 Atomic orbital electron populations 1.22177 0.97457 1.01398 1.00695 1.20970 0.93233 0.84823 0.99336 1.44149 1.74938 1.12245 1.00853 1.18416 1.32875 0.94504 0.93946 0.94874 1.25804 0.98604 0.96613 0.97293 1.70069 1.36705 1.06888 1.41891 0.86693 0.83425 0.76912 0.80777 1.22073 1.21932 1.16623 1.19731 0.87685 0.95997 0.86811 1.24848 0.92051 0.92596 0.98606 1.70169 1.18062 1.20659 1.15919 1.22726 0.90635 1.01394 1.05696 1.23232 0.96505 0.99393 1.00980 1.45516 1.08796 1.24446 1.34552 1.21911 1.03766 0.85540 0.93880 0.90906 0.94381 0.93467 0.93226 0.93922 0.92501 0.90844 0.92030 0.79335 0.77840 0.91844 0.87119 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 10.24 71.98 0.74 -4.91 16 2 C 0.14 5.84 6.41 86.38 0.55 6.39 16 3 N -0.60 -28.17 1.99 -706.34 -1.41 -29.58 16 4 C -0.27 -14.41 9.78 84.03 0.82 -13.59 16 5 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 6 C 0.02 0.89 5.06 84.86 0.43 1.32 16 7 N -0.91 -50.88 13.97 21.65 0.30 -50.58 16 8 Si 0.90 41.51 26.51 68.60 1.82 43.33 16 9 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 11 H -0.24 -10.48 5.44 99.48 0.54 -9.93 16 12 C 0.23 9.91 4.14 85.63 0.35 10.27 16 13 C 0.18 7.84 7.48 138.13 1.03 8.87 16 14 N -0.53 -21.90 11.25 -188.13 -2.12 -24.01 16 15 C -0.06 -1.92 11.87 83.52 0.99 -0.93 16 16 C -0.07 -2.14 11.58 83.09 0.96 -1.18 16 17 N -0.45 -17.18 3.15 -537.61 -1.69 -18.87 16 18 C 0.09 3.23 10.97 127.77 1.40 4.63 16 19 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 20 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 23 H 0.04 1.80 8.00 -2.39 -0.02 1.78 16 24 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.07 3.07 8.08 -2.39 -0.02 3.05 16 26 H 0.06 2.76 3.47 -2.39 -0.01 2.75 16 27 H 0.19 4.99 8.06 -2.91 -0.02 4.97 16 28 H 0.20 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.07 2.65 7.04 -2.39 -0.02 2.63 16 Total: -1.00 -62.28 261.95 5.12 -57.16 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.93 Total: 11.69 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 7.28 Total: 10.86 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.92 Total: -123.04 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.82 Total: 43.33 kcal Total: -62.28 5.12 -57.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604557789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.720 kcal (2) G-P(sol) polarization free energy of solvation -62.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds