Wall clock time and date at job start Sun Mar 29 2020 22:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47354 * 299.99803 * 3 2 1 6 6 H 1.48496 * 109.47086 * 59.99812 * 3 2 1 7 7 C 1.37877 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99898 * 0.02562 * 7 2 1 10 10 N 1.46033 * 109.46922 * 185.41968 * 9 7 2 11 11 C 1.46123 * 113.11219 * 49.13082 * 10 9 7 12 12 C 1.52198 * 111.45713 * 68.70905 * 11 10 9 13 13 C 1.52426 * 112.19276 * 53.36445 * 12 11 10 14 14 C 1.52527 * 111.53949 * 311.90302 * 13 12 11 15 15 C 1.46192 * 113.13422 * 176.54690 * 10 9 7 16 16 C 1.52336 * 110.07377 * 168.48751 * 15 10 9 17 17 C 1.52085 * 112.81748 * 52.33023 * 16 15 10 18 18 C 1.52114 * 113.13206 * 315.93667 * 17 16 15 19 19 H 0.96994 * 120.00171 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47050 * 65.41755 * 9 7 2 21 21 H 1.08997 * 109.46719 * 305.41668 * 9 7 2 22 22 H 1.10099 * 108.05980 * 309.86876 * 11 10 9 23 23 H 1.09360 * 109.94060 * 291.21626 * 12 11 10 24 24 H 1.09862 * 108.84663 * 173.85905 * 12 11 10 25 25 H 1.10496 * 107.99453 * 193.46700 * 13 12 11 26 26 H 1.08356 * 111.29286 * 76.67244 * 13 12 11 27 27 H 1.09161 * 109.72307 * 286.74762 * 14 13 12 28 28 H 1.09804 * 108.81258 * 169.19736 * 14 13 12 29 29 H 1.10119 * 107.97847 * 50.62687 * 15 10 9 30 30 H 1.09695 * 108.99357 * 173.91428 * 16 15 10 31 31 H 1.09726 * 108.92702 * 290.88202 * 16 15 10 32 32 H 1.10798 * 107.79915 * 196.87166 * 17 16 15 33 33 H 1.08746 * 111.03465 * 81.46495 * 17 16 15 34 34 H 1.09617 * 109.34520 * 283.75193 * 18 17 16 35 35 H 1.09609 * 109.35639 * 166.00317 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.1948 -3.6059 0.1312 11 6 3.1491 -3.4203 1.2220 12 6 2.4665 -3.5062 2.5796 13 6 1.6581 -4.7887 2.7374 14 6 0.7657 -5.0408 1.5263 15 6 1.5412 -4.9105 0.2207 16 6 2.5708 -6.0228 0.0682 17 6 3.7473 -5.8721 1.0201 18 6 4.2715 -4.4464 1.1013 19 1 -0.4850 0.8400 -0.0004 20 1 0.6996 -2.6003 -0.9341 21 1 0.5534 -2.5158 0.8378 22 1 3.5918 -2.4172 1.1213 23 1 1.8125 -2.6417 2.7236 24 1 3.2336 -3.4718 3.3654 25 1 1.0063 -4.6747 3.6223 26 1 2.3019 -5.6382 2.9324 27 1 -0.0741 -4.3435 1.5361 28 1 0.3557 -6.0571 1.5940 29 1 0.8248 -4.9896 -0.6118 30 1 2.0821 -6.9886 0.2463 31 1 2.9404 -6.0264 -0.9650 32 1 4.5695 -6.5140 0.6467 33 1 3.5009 -6.2529 2.0085 34 1 4.8611 -4.2247 0.2042 35 1 4.9349 -4.3521 1.9687 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:43 Heat of formation + Delta-G solvation = -16.536065 kcal Electronic energy + Delta-G solvation = -14920.390648 eV Core-core repulsion = 12724.098055 eV Total energy + Delta-G solvation = -2196.292594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.71820 -33.63965 -32.41071 -31.99012 -31.55652 -26.88039 -25.56600 -24.17291 -21.74519 -21.11526 -20.29895 -17.11539 -16.17848 -15.61622 -14.54086 -14.33892 -13.98070 -13.68817 -12.86470 -12.85863 -12.69231 -12.31269 -12.15785 -11.83347 -11.16988 -11.06381 -10.92849 -10.60508 -10.46611 -10.36945 -10.27216 -9.96915 -9.65676 -9.52319 -9.18839 -8.85015 -8.41165 -6.86417 -6.00609 -4.01394 3.31415 3.39085 3.43350 4.44280 4.94869 5.18528 5.34702 5.36038 5.40793 5.46019 5.63445 5.68894 5.77514 5.86125 6.00763 6.18816 6.30156 6.34310 6.36947 6.38751 6.47174 6.51564 6.56834 6.72798 6.76426 6.83397 6.95558 7.13296 7.47845 7.62985 7.85270 8.17857 8.44240 8.74269 9.09073 9.63163 11.10409 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043402 B = 0.010290 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.983782 B = 2720.429065 C = 2864.343907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.202 3.798 10 N -0.539 5.539 11 C 0.098 3.902 12 C -0.138 4.138 13 C -0.108 4.108 14 C -0.142 4.142 15 C 0.094 3.906 16 C -0.099 4.099 17 C -0.108 4.108 18 C -0.104 4.104 19 H 0.260 0.740 20 H 0.024 0.976 21 H -0.003 1.003 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -9.854 3.608 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.077 3.923 10 N -0.262 5.262 11 C -0.011 4.011 12 C -0.177 4.177 13 C -0.146 4.146 14 C -0.181 4.181 15 C -0.015 4.015 16 C -0.137 4.137 17 C -0.146 4.146 18 C -0.142 4.142 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.015 0.985 22 H 0.110 0.890 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.883 -9.718 3.181 11.331 hybrid contribution -0.217 0.968 0.783 1.264 sum 4.666 -8.750 3.964 10.679 Atomic orbital electron populations 1.69970 1.06018 1.26520 1.51135 1.24973 0.94816 0.99188 0.95505 0.86511 0.80134 0.83726 0.77485 1.19669 1.21044 1.21177 1.21275 0.93380 0.90174 1.49934 0.91734 1.19419 0.90235 0.86755 0.95890 1.60386 1.21034 1.01650 1.43092 1.21129 0.92491 0.99421 0.88025 1.21796 0.99575 0.97639 0.98713 1.21318 0.98191 0.98084 0.96986 1.21886 0.98845 1.00727 0.96641 1.21137 0.94246 0.90781 0.95340 1.21256 0.95898 0.96999 0.99542 1.21248 0.97279 0.96801 0.99249 1.21383 0.97612 0.94301 1.00945 0.93067 0.95798 0.98492 0.89030 0.91453 0.93378 0.94274 0.92151 0.91914 0.93267 0.91737 0.93042 0.92218 0.94122 0.92475 0.92221 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.19 8.30 -34.44 -0.29 -14.47 16 8 H 0.06 1.78 6.20 -52.49 -0.33 1.45 16 9 C 0.20 5.27 4.49 -5.45 -0.02 5.25 16 10 N -0.54 -11.73 4.34 -222.60 -0.97 -12.70 16 11 C 0.10 1.95 2.32 -68.77 -0.16 1.79 16 12 C -0.14 -2.57 5.02 -27.43 -0.14 -2.71 16 13 C -0.11 -1.80 5.21 -27.27 -0.14 -1.94 16 14 C -0.14 -2.47 5.04 -27.28 -0.14 -2.61 16 15 C 0.09 1.75 2.57 -68.74 -0.18 1.57 16 16 C -0.10 -1.53 5.47 -27.54 -0.15 -1.68 16 17 C -0.11 -1.58 5.05 -27.65 -0.14 -1.72 16 18 C -0.10 -1.71 5.49 -27.41 -0.15 -1.86 16 19 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 20 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.00 -0.08 6.32 -51.93 -0.33 -0.40 16 22 H 0.09 2.04 5.73 -51.30 -0.29 1.74 16 23 H 0.07 1.45 7.69 -51.73 -0.40 1.05 16 24 H 0.05 0.79 8.17 -51.44 -0.42 0.37 16 25 H 0.04 0.62 8.27 -51.07 -0.42 0.19 16 26 H 0.06 0.90 5.51 -52.29 -0.29 0.61 16 27 H 0.06 1.23 7.15 -51.84 -0.37 0.86 16 28 H 0.05 0.74 8.18 -51.47 -0.42 0.32 16 29 H 0.06 1.23 8.17 -51.29 -0.42 0.81 16 30 H 0.05 0.69 8.17 -51.53 -0.42 0.27 16 31 H 0.06 0.93 8.20 -51.52 -0.42 0.50 16 32 H 0.04 0.53 8.29 -50.90 -0.42 0.10 16 33 H 0.06 0.79 5.72 -52.07 -0.30 0.49 16 34 H 0.06 1.00 8.19 -51.58 -0.42 0.57 16 35 H 0.05 0.75 8.15 -51.58 -0.42 0.33 16 LS Contribution 257.47 15.07 3.88 3.88 Total: -1.00 -28.87 257.47 -8.62 -37.49 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.65 Total: -2.47 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.60 Total: -16.88 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.23 Total: -38.64 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.87 -8.62 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.956 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds