Wall clock time and date at job start Sun Mar 29 2020 22:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99717 * 2 1 4 4 H 1.48496 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47354 * 299.99803 * 3 2 1 6 6 H 1.48496 * 109.47086 * 59.99812 * 3 2 1 7 7 C 1.37877 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99898 * 0.02562 * 7 2 1 10 10 N 1.46033 * 109.46922 * 185.41968 * 9 7 2 11 11 C 1.46123 * 113.11219 * 49.13082 * 10 9 7 12 12 C 1.52198 * 111.45713 * 68.70905 * 11 10 9 13 13 C 1.52426 * 112.19276 * 53.36445 * 12 11 10 14 14 C 1.52527 * 111.53949 * 311.90302 * 13 12 11 15 15 C 1.46192 * 113.13422 * 176.54690 * 10 9 7 16 16 C 1.52336 * 110.07377 * 168.48751 * 15 10 9 17 17 C 1.52085 * 112.81748 * 52.33023 * 16 15 10 18 18 C 1.52114 * 113.13206 * 315.93667 * 17 16 15 19 19 H 0.96994 * 120.00171 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.47050 * 65.41755 * 9 7 2 21 21 H 1.08997 * 109.46719 * 305.41668 * 9 7 2 22 22 H 1.10099 * 108.05980 * 309.86876 * 11 10 9 23 23 H 1.09360 * 109.94060 * 291.21626 * 12 11 10 24 24 H 1.09862 * 108.84663 * 173.85905 * 12 11 10 25 25 H 1.10496 * 107.99453 * 193.46700 * 13 12 11 26 26 H 1.08356 * 111.29286 * 76.67244 * 13 12 11 27 27 H 1.09161 * 109.72307 * 286.74762 * 14 13 12 28 28 H 1.09804 * 108.81258 * 169.19736 * 14 13 12 29 29 H 1.10119 * 107.97847 * 50.62687 * 15 10 9 30 30 H 1.09695 * 108.99357 * 173.91428 * 16 15 10 31 31 H 1.09726 * 108.92702 * 290.88202 * 16 15 10 32 32 H 1.10798 * 107.79915 * 196.87166 * 17 16 15 33 33 H 1.08746 * 111.03465 * 81.46495 * 17 16 15 34 34 H 1.09617 * 109.34520 * 283.75193 * 18 17 16 35 35 H 1.09609 * 109.35639 * 166.00317 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.1948 -3.6059 0.1312 11 6 3.1491 -3.4203 1.2220 12 6 2.4665 -3.5062 2.5796 13 6 1.6581 -4.7887 2.7374 14 6 0.7657 -5.0408 1.5263 15 6 1.5412 -4.9105 0.2207 16 6 2.5708 -6.0228 0.0682 17 6 3.7473 -5.8721 1.0201 18 6 4.2715 -4.4464 1.1013 19 1 -0.4850 0.8400 -0.0004 20 1 0.6996 -2.6003 -0.9341 21 1 0.5534 -2.5158 0.8378 22 1 3.5918 -2.4172 1.1213 23 1 1.8125 -2.6417 2.7236 24 1 3.2336 -3.4718 3.3654 25 1 1.0063 -4.6747 3.6223 26 1 2.3019 -5.6382 2.9324 27 1 -0.0741 -4.3435 1.5361 28 1 0.3557 -6.0571 1.5940 29 1 0.8248 -4.9896 -0.6118 30 1 2.0821 -6.9886 0.2463 31 1 2.9404 -6.0264 -0.9650 32 1 4.5695 -6.5140 0.6467 33 1 3.5009 -6.2529 2.0085 34 1 4.8611 -4.2247 0.2042 35 1 4.9349 -4.3521 1.9687 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:43 Heat of formation + Delta-G solvation = -34.536155 kcal Electronic energy + Delta-G solvation = -14921.171191 eV Core-core repulsion = 12724.098055 eV Total energy + Delta-G solvation = -2197.073136 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22683 -35.55828 -33.84132 -33.44731 -33.37359 -28.85972 -26.92021 -25.90493 -23.56200 -22.67617 -21.64515 -18.66329 -18.21758 -17.24421 -16.29946 -15.93789 -15.61743 -15.19140 -14.27731 -14.24501 -14.19782 -14.08075 -13.92413 -13.59176 -12.84053 -12.77916 -12.41007 -12.32708 -11.97509 -11.92613 -11.78442 -11.71771 -11.47463 -10.88064 -10.77586 -10.58019 -10.50167 -8.62217 -8.20793 -6.30141 1.38010 1.38629 1.52027 2.38784 3.12274 3.38242 3.80106 3.98622 4.06120 4.17870 4.26296 4.39852 4.41510 4.45892 4.64419 4.76154 4.91362 4.97635 5.09363 5.13039 5.14212 5.15671 5.19309 5.24834 5.33781 5.38644 5.42283 5.48285 5.57309 5.66013 5.85792 6.08155 6.54228 6.90236 6.95747 7.40518 8.90913 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043402 B = 0.010290 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.983782 B = 2720.429065 C = 2864.343907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.221 3.779 10 N -0.549 5.549 11 C 0.095 3.905 12 C -0.136 4.136 13 C -0.104 4.104 14 C -0.140 4.140 15 C 0.087 3.913 16 C -0.094 4.094 17 C -0.108 4.108 18 C -0.099 4.099 19 H 0.263 0.737 20 H -0.011 1.011 21 H -0.034 1.034 22 H 0.056 0.944 23 H 0.021 0.979 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.756 -11.499 4.570 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.095 3.905 10 N -0.272 5.272 11 C -0.013 4.013 12 C -0.175 4.175 13 C -0.141 4.141 14 C -0.180 4.180 15 C -0.022 4.022 16 C -0.132 4.132 17 C -0.146 4.146 18 C -0.137 4.137 19 H 0.072 0.928 20 H 0.007 0.993 21 H -0.016 1.016 22 H 0.074 0.926 23 H 0.040 0.960 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.867 -11.386 4.145 13.928 hybrid contribution -0.863 1.455 0.466 1.755 sum 6.003 -9.932 4.611 12.488 Atomic orbital electron populations 1.70107 1.07752 1.27639 1.52041 1.25904 0.95696 1.03128 0.94919 0.85384 0.79093 0.78789 0.77688 1.18583 1.20407 1.20493 1.21566 0.93516 0.91216 1.49698 0.91720 1.18971 0.90241 0.88510 0.92771 1.60303 1.20454 1.01758 1.44686 1.21182 0.92964 0.99260 0.87933 1.21739 0.99657 0.97260 0.98840 1.21311 0.98340 0.97877 0.96559 1.21846 0.97908 1.01579 0.96622 1.21335 0.95273 0.90181 0.95411 1.21240 0.95494 0.96558 0.99919 1.21238 0.97584 0.95614 1.00122 1.21341 0.96116 0.94442 1.01813 0.92841 0.99317 1.01590 0.92555 0.96004 0.90759 0.93516 0.88771 0.95656 0.89926 0.93533 0.89928 0.92581 0.91294 0.90645 0.92933 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 2 C 0.00 0.07 5.46 84.66 0.46 0.54 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.52 -30.35 8.30 25.60 0.21 -30.13 16 8 H 0.06 3.69 6.20 -2.91 -0.02 3.67 16 9 C 0.22 12.31 4.49 85.72 0.39 12.70 16 10 N -0.55 -24.57 4.34 -858.17 -3.72 -28.30 16 11 C 0.10 3.76 2.32 44.65 0.10 3.86 16 12 C -0.14 -4.99 5.02 30.14 0.15 -4.84 16 13 C -0.10 -3.21 5.21 30.25 0.16 -3.05 16 14 C -0.14 -4.79 5.04 30.24 0.15 -4.64 16 15 C 0.09 3.19 2.57 44.63 0.11 3.31 16 16 C -0.09 -2.61 5.47 30.07 0.16 -2.44 16 17 C -0.11 -2.65 5.05 30.00 0.15 -2.50 16 18 C -0.10 -2.96 5.49 30.15 0.17 -2.80 16 19 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 20 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 21 H -0.03 -2.04 6.32 -2.39 -0.02 -2.05 16 22 H 0.06 2.58 5.73 -1.80 -0.01 2.57 16 23 H 0.02 0.96 7.69 -2.20 -0.02 0.95 16 24 H 0.07 2.30 8.17 -1.93 -0.02 2.29 16 25 H 0.05 1.38 8.27 -1.58 -0.01 1.37 16 26 H 0.09 2.33 5.51 -2.73 -0.02 2.31 16 27 H 0.02 1.02 7.15 -2.30 -0.02 1.01 16 28 H 0.08 2.26 8.18 -1.96 -0.02 2.25 16 29 H 0.05 1.83 8.17 -1.79 -0.01 1.81 16 30 H 0.08 1.82 8.17 -2.02 -0.02 1.80 16 31 H 0.06 1.59 8.20 -2.00 -0.02 1.57 16 32 H 0.07 1.39 8.29 -1.42 -0.01 1.38 16 33 H 0.08 1.61 5.72 -2.52 -0.01 1.59 16 34 H 0.05 1.64 8.19 -2.06 -0.02 1.62 16 35 H 0.08 1.92 8.15 -2.06 -0.02 1.90 16 Total: -1.00 -65.72 257.47 1.90 -63.82 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.09 Total: 4.72 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 2.22 Total: -30.00 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -3.44 Total: -85.85 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.72 1.90 -63.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.285 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds