Wall clock time and date at job start Sun Mar 29 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99994 * 2 1 4 4 C 1.53000 * 109.46964 * 66.04816 * 3 2 1 5 5 C 1.50695 * 109.47110 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00166 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00305 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00010 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00469 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46939 * 59.99940 * 9 7 5 11 11 H 1.48492 * 109.47364 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46919 * 300.00300 * 9 7 5 13 13 C 1.46903 * 110.99883 * 236.04661 * 2 1 3 14 14 C 1.50698 * 109.47348 * 293.95479 * 13 2 1 15 15 C 1.39874 * 126.04031 * 270.00061 * 14 13 2 16 16 N 1.30836 * 108.20052 * 179.73886 * 15 14 13 17 17 N 1.40084 * 108.20904 * 0.40640 * 16 15 14 18 18 H 0.97001 * 126.04219 * 179.85882 * 17 16 15 19 19 C 1.34947 * 107.92164 * 359.58781 * 17 16 15 20 20 H 1.09004 * 109.47098 * 183.95360 * 1 2 3 21 21 H 1.08993 * 109.47203 * 303.95310 * 1 2 3 22 22 H 1.09003 * 109.47007 * 63.95116 * 1 2 3 23 23 H 1.08997 * 109.47182 * 186.04319 * 3 2 1 24 24 H 1.09001 * 109.47505 * 306.04613 * 3 2 1 25 25 H 1.09003 * 109.47187 * 299.99868 * 4 3 2 26 26 H 1.09001 * 109.47345 * 60.00121 * 4 3 2 27 27 H 0.96995 * 120.00562 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47163 * 173.95617 * 13 2 1 29 29 H 1.09002 * 109.47019 * 53.95729 * 13 2 1 30 30 H 1.08001 * 125.89534 * 0.02562 * 15 14 13 31 31 H 1.08006 * 126.12506 * 180.22115 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1720 3.4640 1.3186 6 1 2.7200 3.8321 0.4638 7 6 1.9662 4.2815 2.4096 8 7 1.2985 3.8335 3.4504 9 14 2.6356 6.0254 2.4098 10 1 2.0443 6.7827 1.2775 11 1 2.2825 6.6911 3.6892 12 1 4.1129 5.9885 2.2627 13 6 1.9954 -0.7660 -1.1376 14 6 1.6369 -2.2204 -0.9730 15 6 2.4061 -3.1887 -0.3193 16 7 1.7652 -4.3278 -0.3781 17 7 0.5705 -4.1222 -1.0802 18 1 -0.0997 -4.7956 -1.2757 19 6 0.5140 -2.8204 -1.4313 20 1 -0.3633 -1.0253 0.0709 21 1 -0.3633 0.5739 0.8524 22 1 -0.3633 0.4513 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 0.5472 2.0844 1.4266 26 1 2.0658 1.5014 2.1492 27 1 1.1540 4.4084 4.2181 28 1 3.0798 -0.6611 -1.1757 29 1 1.5611 -0.3872 -2.0628 30 1 3.3616 -3.0234 0.1562 31 1 -0.2844 -2.3431 -1.9802 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610662096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:57 Heat of formation + Delta-G solvation = 49.324914 kcal Electronic energy + Delta-G solvation = -13276.646047 eV Core-core repulsion = 10979.669056 eV Total energy + Delta-G solvation = -2296.976991 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.05281 -38.46542 -35.19077 -32.86543 -32.10515 -30.62170 -28.05731 -26.76579 -24.12960 -22.83890 -21.56530 -20.87580 -18.60108 -18.47786 -16.53727 -16.44675 -16.04837 -15.29140 -15.20837 -15.13659 -14.43063 -14.10620 -13.71340 -13.48346 -13.19348 -12.79802 -12.51832 -12.42083 -12.28487 -11.77177 -11.59015 -11.26569 -11.22071 -10.52184 -10.49319 -9.49698 -8.98363 -8.16014 -6.27319 1.01318 1.42886 1.46315 1.54072 1.83462 2.13478 2.44169 3.17367 3.41410 3.94433 4.09932 4.25121 4.40546 4.54101 4.64860 4.73469 4.81101 4.92181 4.93548 5.09394 5.17546 5.26128 5.51253 5.69858 5.73878 5.84668 6.17705 6.42240 6.42746 6.50365 6.77492 6.90834 7.41788 8.96019 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.076900 B = 0.005483 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.021430 B = 5105.757817 C = 5132.203309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.555 5.555 3 C 0.080 3.920 4 C 0.035 3.965 5 C -0.544 4.544 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.966 3.034 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.134 3.866 14 C -0.242 4.242 15 C 0.057 3.943 16 N -0.333 5.333 17 N -0.471 5.471 18 H 0.451 0.549 19 C 0.075 3.925 20 H 0.075 0.925 21 H 0.042 0.958 22 H 0.031 0.969 23 H 0.065 0.935 24 H 0.023 0.977 25 H -0.006 1.006 26 H -0.012 1.012 27 H 0.263 0.737 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.188 0.812 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -11.673 -11.789 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.279 5.279 3 C -0.048 4.048 4 C -0.003 4.003 5 C -0.582 4.582 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.006 3.994 14 C -0.254 4.254 15 C -0.129 4.129 16 N -0.156 5.156 17 N -0.181 5.181 18 H 0.298 0.702 19 C -0.074 4.074 20 H 0.094 0.906 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.012 0.988 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.205 0.795 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.922 -13.094 -10.879 17.132 hybrid contribution -0.427 1.822 -0.463 1.928 sum -2.349 -11.272 -11.342 16.162 Atomic orbital electron populations 1.22289 0.87712 1.01582 0.99920 1.61974 1.08291 1.13883 1.43773 1.21965 0.98862 0.86734 0.97201 1.18940 0.94957 0.93625 0.92766 1.21636 1.35226 0.98990 1.02350 0.91986 1.25972 0.95439 1.03260 0.95048 1.70114 1.42151 1.38339 1.06826 0.85488 0.79121 0.78876 0.77470 1.19062 1.21003 1.19116 1.20302 1.00135 0.87990 0.91001 1.20086 0.98180 0.96645 1.10506 1.24045 1.00767 0.89858 0.98241 1.77247 0.96299 1.23989 1.18062 1.46284 1.18274 1.09186 1.44309 0.70228 1.22829 0.99634 0.85050 0.99932 0.90602 0.93872 0.95055 0.91688 0.95869 0.98803 0.99314 0.92851 0.90180 0.93446 0.79472 0.77824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 9.08 127.69 1.16 2.25 16 2 N -0.55 -19.88 4.75 -927.04 -4.41 -24.29 16 3 C 0.08 3.36 4.90 86.30 0.42 3.78 16 4 C 0.03 1.87 4.90 29.85 0.15 2.02 16 5 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 6 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 9 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.13 3.68 5.45 85.56 0.47 4.15 16 14 C -0.24 -6.09 4.99 -20.14 -0.10 -6.19 16 15 C 0.06 1.52 11.96 85.24 1.02 2.54 16 16 N -0.33 -8.83 12.70 -57.02 -0.72 -9.55 16 17 N -0.47 -9.13 7.36 -57.59 -0.42 -9.55 16 18 H 0.45 5.41 8.96 -213.33 -1.91 3.49 16 19 C 0.07 1.45 10.52 83.54 0.88 2.32 16 20 H 0.08 2.14 6.32 -2.38 -0.02 2.13 16 21 H 0.04 1.69 6.30 -2.39 -0.02 1.68 16 22 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 2.65 7.93 -2.39 -0.02 2.63 16 24 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 25 H -0.01 -0.37 6.47 -2.39 -0.02 -0.38 16 26 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.08 2.15 7.93 -2.38 -0.02 2.13 16 29 H 0.05 1.16 8.12 -2.39 -0.02 1.14 16 30 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -70.16 263.93 0.65 -69.51 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -0.79 Total: 4.61 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 4.69 Total: -19.62 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -5.27 Total: -100.94 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.16 0.65 -69.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610662096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.833 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds