Wall clock time and date at job start Sun Mar 29 2020 21:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35316 * 126.12766 * 2 1 4 4 C 1.50693 * 126.04101 * 359.94736 * 3 2 1 5 5 N 1.46494 * 109.47424 * 77.87320 * 4 3 2 6 6 C 1.46503 * 119.99818 * 84.19586 * 5 4 3 7 7 C 1.36934 * 120.00375 * 264.19330 * 5 4 3 8 8 H 1.08001 * 120.00225 * 142.92958 * 7 5 4 9 9 C 1.38814 * 120.00296 * 322.93579 * 7 5 4 10 10 N 1.31610 * 120.00387 * 161.50527 * 9 7 5 11 11 Si 1.86797 * 119.99517 * 341.50653 * 9 7 5 12 12 H 1.48501 * 109.47501 * 95.43233 * 11 9 7 13 13 H 1.48498 * 109.47062 * 215.43132 * 11 9 7 14 14 H 1.48502 * 109.47630 * 335.42849 * 11 9 7 15 15 C 1.39873 * 107.92077 * 179.97438 * 3 2 1 16 16 N 1.30842 * 108.20161 * 0.02562 * 15 3 2 17 17 N 1.34952 * 126.12713 * 179.69333 * 2 1 3 18 18 C 1.46497 * 126.03769 * 0.03111 * 17 2 1 19 19 H 1.08997 * 109.47080 * 85.52274 * 1 2 3 20 20 H 1.09004 * 109.46919 * 205.52050 * 1 2 3 21 21 H 1.08998 * 109.47277 * 325.52419 * 1 2 3 22 22 H 1.08998 * 109.47469 * 197.87787 * 4 3 2 23 23 H 1.09005 * 109.46855 * 317.87268 * 4 3 2 24 24 H 1.09001 * 109.47157 * 85.10577 * 6 5 4 25 25 H 1.08998 * 109.47346 * 205.10586 * 6 5 4 26 26 H 1.08997 * 109.47030 * 325.10353 * 6 5 4 27 27 H 0.97005 * 120.00280 * 179.97438 * 10 9 7 28 28 H 1.07999 * 125.89985 * 179.97438 * 15 3 2 29 29 H 1.09002 * 109.47283 * 90.00314 * 18 17 2 30 30 H 1.09005 * 109.47502 * 210.00387 * 18 17 2 31 31 H 1.09006 * 109.47137 * 330.00298 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8433 2.5275 -0.0011 5 7 1.4165 2.9043 1.3487 6 6 2.4062 3.3529 2.3313 7 6 0.0926 2.8373 1.6920 8 1 -0.1926 2.5212 2.6845 9 6 -0.8830 3.1756 0.7642 10 7 -2.1255 2.7795 0.9417 11 14 -0.4322 4.1930 -0.7361 12 1 -0.1680 3.2903 -1.8853 13 1 -1.5552 5.1051 -1.0713 14 1 0.7847 4.9926 -0.4448 15 6 3.6334 0.6559 0.0006 16 7 3.6333 -0.6525 0.0004 17 7 2.3026 -1.0900 0.0058 18 6 1.8539 -2.4846 0.0127 19 1 -0.3633 0.0802 -1.0245 20 1 -0.3633 -0.9274 0.4428 21 1 -0.3634 0.8471 0.5817 22 1 2.6633 3.1727 -0.3163 23 1 1.0070 2.6396 -0.6912 24 1 2.5858 4.4205 2.2048 25 1 2.0310 3.1643 3.3371 26 1 3.3383 2.8076 2.1832 27 1 -2.8073 3.0162 0.2935 28 1 4.5083 1.2891 0.0004 29 1 1.7431 -2.8356 -1.0133 30 1 2.5896 -3.1005 0.5300 31 1 0.8951 -2.5553 0.5264 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610842990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:30 Heat of formation + Delta-G solvation = 104.663122 kcal Electronic energy + Delta-G solvation = -14292.142887 eV Core-core repulsion = 11997.565541 eV Total energy + Delta-G solvation = -2294.577346 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.63831 -35.85704 -32.98623 -31.62963 -31.26661 -27.91421 -26.20443 -26.07118 -24.30358 -21.17350 -20.26038 -18.81518 -16.71053 -15.74406 -15.35772 -14.99970 -13.92269 -13.82815 -13.30961 -12.92884 -12.84908 -12.44052 -12.23375 -11.90229 -11.71058 -11.64827 -11.24318 -11.07703 -10.61242 -10.44136 -10.36958 -9.68569 -9.49774 -8.66374 -8.48440 -7.58300 -6.77425 -5.98971 -3.38968 2.48340 3.05304 3.31265 3.43274 3.50816 3.54223 4.52320 4.94396 5.26203 5.36409 5.41124 5.49027 5.56459 5.58712 5.89707 6.06393 6.29506 6.34020 6.40924 6.50974 6.59823 6.79076 6.81561 6.97854 7.24536 7.29082 7.71710 8.07856 8.30522 8.38296 9.01704 9.71674 10.17253 11.15629 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.013023 C = 0.011307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.899778 B = 2149.595705 C = 2475.713830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.110 3.890 3 C -0.243 4.243 4 C 0.208 3.792 5 N -0.609 5.609 6 C 0.129 3.871 7 C -0.258 4.258 8 H 0.078 0.922 9 C 0.033 3.967 10 N -0.905 5.905 11 Si 0.877 3.123 12 H -0.285 1.285 13 H -0.303 1.303 14 H -0.268 1.268 15 C 0.049 3.951 16 N -0.321 5.321 17 N -0.386 5.386 18 C 0.106 3.894 19 H 0.063 0.937 20 H 0.053 0.947 21 H 0.142 0.858 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.006 0.994 25 H 0.042 0.958 26 H 0.026 0.974 27 H 0.263 0.737 28 H 0.173 0.827 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -5.752 -2.810 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.016 4.016 3 C -0.256 4.256 4 C 0.081 3.919 5 N -0.333 5.333 6 C -0.017 4.017 7 C -0.387 4.387 8 H 0.096 0.904 9 C -0.167 4.167 10 N -0.547 5.547 11 Si 0.708 3.292 12 H -0.213 1.213 13 H -0.231 1.231 14 H -0.193 1.193 15 C -0.137 4.137 16 N -0.142 5.142 17 N -0.170 5.170 18 C -0.036 4.036 19 H 0.082 0.918 20 H 0.072 0.928 21 H 0.160 0.840 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.190 0.810 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.018 -6.927 -2.831 10.259 hybrid contribution -0.298 1.093 -0.880 1.435 sum 6.720 -5.834 -3.711 9.641 Atomic orbital electron populations 1.20932 0.86692 1.06133 1.03360 1.21030 0.94860 0.86337 0.99415 1.20883 0.91689 0.97994 1.15055 1.19486 0.96976 0.87540 0.87877 1.44113 1.04368 1.75515 1.09307 1.21000 0.91773 0.95673 0.93220 1.18830 0.79961 1.39379 1.00566 0.90405 1.25415 0.94863 0.97961 0.98426 1.69823 1.01563 1.46240 1.37104 0.86937 0.77547 0.81400 0.83347 1.21283 1.23125 1.19300 1.23632 0.97707 0.91964 1.00383 1.77146 0.97020 1.13072 1.26994 1.48346 1.04040 1.05635 1.59019 1.21670 1.00745 0.78672 1.02487 0.91794 0.92847 0.83976 0.93800 0.92267 0.97551 0.93928 0.95480 0.92688 0.80972 0.91594 0.90052 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 9.91 36.00 0.36 -1.95 16 2 C 0.11 2.27 6.93 -82.27 -0.57 1.70 16 3 C -0.24 -5.13 5.67 -105.06 -0.60 -5.72 16 4 C 0.21 4.64 4.34 -5.20 -0.02 4.62 16 5 N -0.61 -14.60 2.50 -182.51 -0.46 -15.06 16 6 C 0.13 2.65 10.72 59.85 0.64 3.29 16 7 C -0.26 -6.96 8.21 -15.06 -0.12 -7.08 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.03 0.90 4.06 -17.43 -0.07 0.83 16 10 N -0.91 -25.87 13.88 55.49 0.77 -25.10 16 11 Si 0.88 21.77 24.75 -169.99 -4.21 17.56 16 12 H -0.28 -6.88 6.72 56.52 0.38 -6.50 16 13 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 14 H -0.27 -6.60 7.07 56.52 0.40 -6.20 16 15 C 0.05 0.93 11.96 -17.36 -0.21 0.72 16 16 N -0.32 -6.22 12.58 30.63 0.39 -5.84 16 17 N -0.39 -7.17 4.01 -63.88 -0.26 -7.42 16 18 C 0.11 1.41 11.27 59.85 0.67 2.08 16 19 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 20 H 0.05 0.94 6.95 -51.93 -0.36 0.57 16 21 H 0.14 3.44 4.32 -51.93 -0.22 3.22 16 22 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 23 H 0.06 1.42 3.21 -51.93 -0.17 1.26 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 25 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 26 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.99 6.98 -51.93 -0.36 0.63 16 LS Contribution 254.37 15.07 3.83 3.83 Total: -1.00 -30.53 254.37 -3.92 -34.44 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.07 Total: -0.92 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 0.08 Total: -1.51 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.44 Total: -53.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.21 Total: 17.56 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.53 -3.92 -34.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610842990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.107 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds