Wall clock time and date at job start Sun Mar 29 2020 21:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35316 * 126.12766 * 2 1 4 4 C 1.50693 * 126.04101 * 359.94736 * 3 2 1 5 5 N 1.46494 * 109.47424 * 77.87320 * 4 3 2 6 6 C 1.46503 * 119.99818 * 84.19586 * 5 4 3 7 7 C 1.36934 * 120.00375 * 264.19330 * 5 4 3 8 8 H 1.08001 * 120.00225 * 142.92958 * 7 5 4 9 9 C 1.38814 * 120.00296 * 322.93579 * 7 5 4 10 10 N 1.31610 * 120.00387 * 161.50527 * 9 7 5 11 11 Si 1.86797 * 119.99517 * 341.50653 * 9 7 5 12 12 H 1.48501 * 109.47501 * 95.43233 * 11 9 7 13 13 H 1.48498 * 109.47062 * 215.43132 * 11 9 7 14 14 H 1.48502 * 109.47630 * 335.42849 * 11 9 7 15 15 C 1.39873 * 107.92077 * 179.97438 * 3 2 1 16 16 N 1.30842 * 108.20161 * 0.02562 * 15 3 2 17 17 N 1.34952 * 126.12713 * 179.69333 * 2 1 3 18 18 C 1.46497 * 126.03769 * 0.03111 * 17 2 1 19 19 H 1.08997 * 109.47080 * 85.52274 * 1 2 3 20 20 H 1.09004 * 109.46919 * 205.52050 * 1 2 3 21 21 H 1.08998 * 109.47277 * 325.52419 * 1 2 3 22 22 H 1.08998 * 109.47469 * 197.87787 * 4 3 2 23 23 H 1.09005 * 109.46855 * 317.87268 * 4 3 2 24 24 H 1.09001 * 109.47157 * 85.10577 * 6 5 4 25 25 H 1.08998 * 109.47346 * 205.10586 * 6 5 4 26 26 H 1.08997 * 109.47030 * 325.10353 * 6 5 4 27 27 H 0.97005 * 120.00280 * 179.97438 * 10 9 7 28 28 H 1.07999 * 125.89985 * 179.97438 * 15 3 2 29 29 H 1.09002 * 109.47283 * 90.00314 * 18 17 2 30 30 H 1.09005 * 109.47502 * 210.00387 * 18 17 2 31 31 H 1.09006 * 109.47137 * 330.00298 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8433 2.5275 -0.0011 5 7 1.4165 2.9043 1.3487 6 6 2.4062 3.3529 2.3313 7 6 0.0926 2.8373 1.6920 8 1 -0.1926 2.5212 2.6845 9 6 -0.8830 3.1756 0.7642 10 7 -2.1255 2.7795 0.9417 11 14 -0.4322 4.1930 -0.7361 12 1 -0.1680 3.2903 -1.8853 13 1 -1.5552 5.1051 -1.0713 14 1 0.7847 4.9926 -0.4448 15 6 3.6334 0.6559 0.0006 16 7 3.6333 -0.6525 0.0004 17 7 2.3026 -1.0900 0.0058 18 6 1.8539 -2.4846 0.0127 19 1 -0.3633 0.0802 -1.0245 20 1 -0.3633 -0.9274 0.4428 21 1 -0.3634 0.8471 0.5817 22 1 2.6633 3.1727 -0.3163 23 1 1.0070 2.6396 -0.6912 24 1 2.5858 4.4205 2.2048 25 1 2.0310 3.1643 3.3371 26 1 3.3383 2.8076 2.1832 27 1 -2.8073 3.0162 0.2935 28 1 4.5083 1.2891 0.0004 29 1 1.7431 -2.8356 -1.0133 30 1 2.5896 -3.1005 0.5300 31 1 0.8951 -2.5553 0.5264 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610842990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:30 Heat of formation + Delta-G solvation = 84.441538 kcal Electronic energy + Delta-G solvation = -14293.019761 eV Core-core repulsion = 11997.565541 eV Total energy + Delta-G solvation = -2295.454220 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.10858 -37.67162 -34.41101 -33.59187 -32.84119 -29.46218 -28.04104 -27.44624 -25.96032 -23.02021 -21.69522 -20.37773 -18.62996 -17.28983 -17.14308 -16.46146 -15.69189 -15.23851 -14.89990 -14.73730 -14.64274 -13.86897 -13.62234 -13.49647 -13.31295 -13.15337 -12.87577 -12.78529 -12.39562 -12.28076 -12.08006 -11.66056 -11.22102 -10.54412 -10.05189 -9.13756 -8.68730 -8.09312 -5.46690 0.99636 1.35930 1.47356 1.56813 1.74923 1.92169 2.48470 3.21039 3.63272 3.73906 3.96189 4.27202 4.37525 4.42685 4.47184 4.63522 4.73635 4.75132 4.78588 4.85578 5.05295 5.15559 5.17178 5.40188 5.60531 5.83488 6.04106 6.23325 6.26318 6.84208 7.06848 7.71305 8.16783 9.08629 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.013023 C = 0.011307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.899778 B = 2149.595705 C = 2475.713830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.096 3.904 3 C -0.266 4.266 4 C 0.208 3.792 5 N -0.622 5.622 6 C 0.128 3.872 7 C -0.246 4.246 8 H 0.041 0.959 9 C -0.003 4.003 10 N -0.941 5.941 11 Si 0.928 3.072 12 H -0.276 1.276 13 H -0.312 1.312 14 H -0.261 1.261 15 C 0.052 3.948 16 N -0.330 5.330 17 N -0.385 5.385 18 C 0.094 3.906 19 H 0.068 0.932 20 H 0.074 0.926 21 H 0.105 0.895 22 H 0.066 0.934 23 H 0.040 0.960 24 H 0.019 0.981 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.262 0.738 28 H 0.204 0.796 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 -6.265 -3.618 10.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.032 4.032 3 C -0.279 4.279 4 C 0.082 3.918 5 N -0.346 5.346 6 C -0.017 4.017 7 C -0.376 4.376 8 H 0.058 0.942 9 C -0.199 4.199 10 N -0.585 5.585 11 Si 0.758 3.242 12 H -0.203 1.203 13 H -0.241 1.241 14 H -0.185 1.185 15 C -0.134 4.134 16 N -0.152 5.152 17 N -0.169 5.169 18 C -0.046 4.046 19 H 0.087 0.913 20 H 0.093 0.907 21 H 0.124 0.876 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.221 0.779 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.725 -7.463 -3.639 12.045 hybrid contribution -0.790 1.148 -0.568 1.505 sum 7.936 -6.315 -4.207 10.980 Atomic orbital electron populations 1.20760 0.87045 1.05653 1.03159 1.21084 0.94935 0.87368 0.99816 1.20868 0.92961 0.97410 1.16690 1.19465 0.96872 0.89010 0.86439 1.44259 1.03718 1.76065 1.10554 1.21083 0.91825 0.96622 0.92139 1.18581 0.81744 1.38314 0.98984 0.94179 1.25771 0.94641 0.98809 1.00727 1.69921 1.02532 1.47724 1.38358 0.86111 0.77005 0.79965 0.81125 1.20349 1.24085 1.18543 1.24042 0.97844 0.92043 0.99424 1.77115 0.97580 1.13380 1.27112 1.48689 1.03457 1.06884 1.57855 1.22076 1.01792 0.76347 1.04355 0.91317 0.90687 0.87635 0.91603 0.94190 0.96323 0.94547 0.93156 0.92843 0.77941 0.89502 0.88409 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 9.91 71.23 0.71 -3.61 16 2 C 0.10 3.81 6.93 41.40 0.29 4.09 16 3 C -0.27 -10.70 5.67 -20.15 -0.11 -10.81 16 4 C 0.21 8.90 4.34 85.63 0.37 9.28 16 5 N -0.62 -29.12 2.50 -731.33 -1.83 -30.95 16 6 C 0.13 5.04 10.72 127.77 1.37 6.41 16 7 C -0.25 -13.41 8.21 84.03 0.69 -12.72 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.00 -0.15 4.06 84.86 0.34 0.20 16 10 N -0.94 -54.88 13.88 21.65 0.30 -54.58 16 11 Si 0.93 44.75 24.75 68.60 1.70 46.45 16 12 H -0.28 -12.79 6.72 99.48 0.67 -12.13 16 13 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 14 H -0.26 -12.16 7.07 99.48 0.70 -11.46 16 15 C 0.05 1.81 11.96 85.24 1.02 2.83 16 16 N -0.33 -11.90 12.58 -57.02 -0.72 -12.62 16 17 N -0.38 -13.35 4.01 -356.03 -1.43 -14.78 16 18 C 0.09 2.23 11.27 127.77 1.44 3.67 16 19 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 20 H 0.07 2.55 6.95 -2.39 -0.02 2.54 16 21 H 0.11 5.15 4.32 -2.39 -0.01 5.14 16 22 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 23 H 0.04 1.87 3.21 -2.38 -0.01 1.86 16 24 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.04 1.44 8.00 -2.39 -0.02 1.43 16 26 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 27 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 28 H 0.20 5.53 8.06 -2.91 -0.02 5.51 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.10 2.02 6.98 -2.38 -0.02 2.00 16 Total: -1.00 -64.71 254.37 5.21 -59.50 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.07 Total: 7.66 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.11 Total: -0.68 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -3.67 Total: -112.93 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.70 Total: 46.45 kcal Total: -64.71 5.21 -59.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610842990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.937 kcal (2) G-P(sol) polarization free energy of solvation -64.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds