Wall clock time and date at job start Sun Mar 29 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35322 * 126.12350 * 2 1 4 4 C 1.39869 * 107.92000 * 180.14323 * 3 2 1 5 5 C 1.50698 * 125.90006 * 179.86069 * 4 3 2 6 6 N 1.46506 * 109.46779 * 94.72128 * 5 4 3 7 7 C 1.46503 * 119.99572 * 269.99907 * 6 5 4 8 8 C 1.36933 * 119.99902 * 90.00127 * 6 5 4 9 9 H 1.07989 * 120.00439 * 20.37299 * 8 6 5 10 10 C 1.38815 * 119.99522 * 200.36498 * 8 6 5 11 11 N 1.31617 * 120.00399 * 14.99253 * 10 8 6 12 12 Si 1.86803 * 119.99888 * 194.98133 * 10 8 6 13 13 H 1.48500 * 109.46886 * 85.00973 * 12 10 8 14 14 H 1.48499 * 109.46925 * 205.00986 * 12 10 8 15 15 H 1.48505 * 109.47008 * 325.00839 * 12 10 8 16 16 N 1.30840 * 108.20281 * 359.60402 * 4 3 2 17 17 N 1.34946 * 126.13188 * 179.70582 * 2 1 3 18 18 C 1.46501 * 126.03785 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47392 * 270.28823 * 1 2 3 20 20 H 1.08996 * 109.47678 * 30.29386 * 1 2 3 21 21 H 1.09000 * 109.46535 * 150.29481 * 1 2 3 22 22 H 1.07997 * 126.03898 * 0.02905 * 3 2 1 23 23 H 1.08996 * 109.47369 * 334.72405 * 5 4 3 24 24 H 1.08991 * 109.47335 * 214.71812 * 5 4 3 25 25 H 1.09004 * 109.47254 * 95.10137 * 7 6 5 26 26 H 1.09001 * 109.46747 * 215.09223 * 7 6 5 27 27 H 1.08998 * 109.47265 * 335.09441 * 7 6 5 28 28 H 0.96994 * 120.00539 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.47087 * 270.02683 * 18 17 2 30 30 H 1.09005 * 109.46537 * 30.02670 * 18 17 2 31 31 H 1.08992 * 109.47343 * 150.02057 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 3.6334 0.6561 -0.0033 5 6 4.8542 1.5397 -0.0075 6 7 5.3202 1.7350 1.3677 7 6 4.8121 2.8571 2.1608 8 6 6.2307 0.8689 1.9116 9 1 6.8474 0.2593 1.2680 10 6 6.3610 0.7745 3.2904 11 7 5.4325 1.2786 4.0753 12 14 7.8542 -0.0682 4.0319 13 1 8.9710 0.9050 4.1359 14 1 7.5140 -0.5777 5.3846 15 1 8.2644 -1.2017 3.1647 16 7 3.6334 -0.6523 0.0033 17 7 2.3027 -1.0899 0.0056 18 6 1.8541 -2.4845 0.0133 19 1 -0.3634 0.0052 1.0276 20 1 -0.3634 0.8873 -0.5184 21 1 -0.3632 -0.8926 -0.5093 22 1 1.9739 2.1211 0.0004 23 1 4.6025 2.5051 -0.4463 24 1 5.6421 1.0680 -0.5945 25 1 3.9735 2.5208 2.7706 26 1 5.6045 3.2326 2.8083 27 1 4.4803 3.6528 1.4938 28 1 5.5237 1.2131 5.0387 29 1 1.7428 -2.8247 1.0428 30 1 0.8956 -2.5606 -0.5003 31 1 2.5900 -3.1057 -0.4971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610859279.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:31 Heat of formation + Delta-G solvation = 100.432830 kcal Electronic energy + Delta-G solvation = -13814.474496 eV Core-core repulsion = 11519.713711 eV Total energy + Delta-G solvation = -2294.760785 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47571 -35.55446 -32.99520 -31.49236 -30.93823 -27.49175 -26.50977 -25.72140 -24.69367 -21.34277 -19.68193 -18.50997 -16.61855 -15.93894 -15.14805 -14.66795 -13.77177 -13.53821 -13.37637 -13.16052 -12.99804 -12.55448 -12.11465 -11.90605 -11.80320 -11.43247 -10.92765 -10.78410 -10.58782 -10.29845 -9.93409 -9.82902 -9.57901 -8.45066 -8.35330 -7.78644 -6.72052 -5.62512 -3.04985 2.53174 3.15136 3.45416 3.50746 3.52893 3.63881 4.62235 4.95119 5.05761 5.26554 5.40490 5.51817 5.62892 5.66402 5.79720 5.82799 5.91957 6.17774 6.36240 6.53247 6.73054 6.84834 6.91074 7.44786 7.50138 7.68572 7.83346 7.93730 8.47402 8.61513 9.33427 9.95647 10.43620 11.42814 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036598 B = 0.009388 C = 0.008548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.886545 B = 2981.889414 C = 3274.930129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.060 3.940 3 C -0.264 4.264 4 C 0.078 3.922 5 C 0.218 3.782 6 N -0.587 5.587 7 C 0.164 3.836 8 C -0.243 4.243 9 H 0.072 0.928 10 C -0.001 4.001 11 N -0.908 5.908 12 Si 0.905 3.095 13 H -0.287 1.287 14 H -0.293 1.293 15 H -0.280 1.280 16 N -0.284 5.284 17 N -0.389 5.389 18 C 0.107 3.893 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.062 0.938 22 H 0.136 0.864 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.028 0.972 26 H 0.045 0.955 27 H 0.000 1.000 28 H 0.250 0.750 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -2.230 -8.104 12.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.294 4.294 4 C -0.093 4.093 5 C 0.088 3.912 6 N -0.308 5.308 7 C 0.019 3.981 8 C -0.373 4.373 9 H 0.090 0.910 10 C -0.199 4.199 11 N -0.553 5.553 12 Si 0.735 3.265 13 H -0.214 1.214 14 H -0.219 1.219 15 H -0.205 1.205 16 N -0.106 5.106 17 N -0.172 5.172 18 C -0.035 4.035 19 H 0.092 0.908 20 H 0.098 0.902 21 H 0.081 0.919 22 H 0.154 0.846 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.019 0.981 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.640 -3.420 -7.897 12.195 hybrid contribution -0.014 0.006 0.793 0.793 sum -8.654 -3.414 -7.104 11.706 Atomic orbital electron populations 1.20332 0.88395 1.02800 1.02696 1.20879 0.93928 0.88027 1.03794 1.21063 0.92433 0.98160 1.17739 1.24000 0.97291 0.91880 0.96102 1.19469 0.89227 0.93810 0.88661 1.44159 1.47605 1.28899 1.10150 1.20820 0.98548 0.86349 0.92372 1.19261 1.10189 1.18000 0.89859 0.91050 1.24993 0.98150 1.00121 0.96600 1.70102 1.32232 1.50020 1.02978 0.86256 0.82729 0.79225 0.78293 1.21437 1.21937 1.20545 1.77444 0.94550 1.13321 1.25256 1.48513 1.04661 1.05100 1.58880 1.21620 1.00041 0.79229 1.02602 0.90832 0.90240 0.91942 0.84648 0.92162 0.92341 0.95352 0.93645 0.98119 0.93939 0.91577 0.90532 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.12 36.00 0.36 -0.63 16 2 C 0.06 1.06 6.93 -82.26 -0.57 0.49 16 3 C -0.26 -5.24 10.65 -40.01 -0.43 -5.67 16 4 C 0.08 1.76 6.80 -82.41 -0.56 1.20 16 5 C 0.22 4.93 6.27 -5.19 -0.03 4.90 16 6 N -0.59 -15.67 2.91 -182.50 -0.53 -16.21 16 7 C 0.16 4.22 9.02 59.85 0.54 4.75 16 8 C -0.24 -7.09 9.68 -15.06 -0.15 -7.23 16 9 H 0.07 2.06 7.86 -52.49 -0.41 1.65 16 10 C 0.00 -0.02 5.06 -17.43 -0.09 -0.11 16 11 N -0.91 -27.80 10.67 55.49 0.59 -27.21 16 12 Si 0.90 23.00 29.58 -169.99 -5.03 17.98 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 16 N -0.28 -6.65 12.58 33.67 0.42 -6.22 16 17 N -0.39 -7.40 4.01 -63.89 -0.26 -7.66 16 18 C 0.11 1.45 11.27 59.85 0.67 2.12 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.60 7.08 -51.93 -0.37 0.23 16 22 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 23 H 0.06 1.18 7.86 -51.93 -0.41 0.77 16 24 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 25 H 0.03 0.80 7.40 -51.93 -0.38 0.41 16 26 H 0.04 1.23 7.21 -51.93 -0.37 0.86 16 27 H 0.00 0.01 7.83 -51.93 -0.41 -0.40 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.75 7.05 -51.93 -0.37 0.38 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 266.13 15.07 4.01 4.01 Total: -1.00 -34.83 266.13 -5.42 -40.25 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -4.39 Total: -4.76 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.24 Total: -0.18 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.23 Total: -57.29 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.98 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.83 -5.42 -40.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610859279.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.680 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds