Wall clock time and date at job start Sun Mar 29 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35322 * 126.12350 * 2 1 4 4 C 1.39869 * 107.92000 * 180.14323 * 3 2 1 5 5 C 1.50698 * 125.90006 * 179.86069 * 4 3 2 6 6 N 1.46506 * 109.46779 * 94.72128 * 5 4 3 7 7 C 1.46503 * 119.99572 * 269.99907 * 6 5 4 8 8 C 1.36933 * 119.99902 * 90.00127 * 6 5 4 9 9 H 1.07989 * 120.00439 * 20.37299 * 8 6 5 10 10 C 1.38815 * 119.99522 * 200.36498 * 8 6 5 11 11 N 1.31617 * 120.00399 * 14.99253 * 10 8 6 12 12 Si 1.86803 * 119.99888 * 194.98133 * 10 8 6 13 13 H 1.48500 * 109.46886 * 85.00973 * 12 10 8 14 14 H 1.48499 * 109.46925 * 205.00986 * 12 10 8 15 15 H 1.48505 * 109.47008 * 325.00839 * 12 10 8 16 16 N 1.30840 * 108.20281 * 359.60402 * 4 3 2 17 17 N 1.34946 * 126.13188 * 179.70582 * 2 1 3 18 18 C 1.46501 * 126.03785 * 359.97438 * 17 2 1 19 19 H 1.09002 * 109.47392 * 270.28823 * 1 2 3 20 20 H 1.08996 * 109.47678 * 30.29386 * 1 2 3 21 21 H 1.09000 * 109.46535 * 150.29481 * 1 2 3 22 22 H 1.07997 * 126.03898 * 0.02905 * 3 2 1 23 23 H 1.08996 * 109.47369 * 334.72405 * 5 4 3 24 24 H 1.08991 * 109.47335 * 214.71812 * 5 4 3 25 25 H 1.09004 * 109.47254 * 95.10137 * 7 6 5 26 26 H 1.09001 * 109.46747 * 215.09223 * 7 6 5 27 27 H 1.08998 * 109.47265 * 335.09441 * 7 6 5 28 28 H 0.96994 * 120.00539 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.47087 * 270.02683 * 18 17 2 30 30 H 1.09005 * 109.46537 * 30.02670 * 18 17 2 31 31 H 1.08992 * 109.47343 * 150.02057 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 3.6334 0.6561 -0.0033 5 6 4.8542 1.5397 -0.0075 6 7 5.3202 1.7350 1.3677 7 6 4.8121 2.8571 2.1608 8 6 6.2307 0.8689 1.9116 9 1 6.8474 0.2593 1.2680 10 6 6.3610 0.7745 3.2904 11 7 5.4325 1.2786 4.0753 12 14 7.8542 -0.0682 4.0319 13 1 8.9710 0.9050 4.1359 14 1 7.5140 -0.5777 5.3846 15 1 8.2644 -1.2017 3.1647 16 7 3.6334 -0.6523 0.0033 17 7 2.3027 -1.0899 0.0056 18 6 1.8541 -2.4845 0.0133 19 1 -0.3634 0.0052 1.0276 20 1 -0.3634 0.8873 -0.5184 21 1 -0.3632 -0.8926 -0.5093 22 1 1.9739 2.1211 0.0004 23 1 4.6025 2.5051 -0.4463 24 1 5.6421 1.0680 -0.5945 25 1 3.9735 2.5208 2.7706 26 1 5.6045 3.2326 2.8083 27 1 4.4803 3.6528 1.4938 28 1 5.5237 1.2131 5.0387 29 1 1.7428 -2.8247 1.0428 30 1 0.8956 -2.5606 -0.5003 31 1 2.5900 -3.1057 -0.4971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610859279.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:31 Heat of formation + Delta-G solvation = 76.778843 kcal Electronic energy + Delta-G solvation = -13815.500210 eV Core-core repulsion = 11519.713711 eV Total energy + Delta-G solvation = -2295.786499 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.95459 -37.53051 -34.58546 -32.95348 -32.72845 -29.16632 -28.01670 -27.61033 -26.24781 -23.34063 -21.15862 -20.03361 -18.74754 -17.37052 -16.83561 -16.40122 -15.49423 -15.19767 -15.17711 -14.76062 -14.04532 -13.91933 -13.56008 -13.24326 -13.15466 -13.09482 -12.76979 -12.66749 -12.49268 -12.21870 -12.02492 -11.89867 -11.20496 -10.65065 -9.88728 -9.25294 -8.86102 -7.83557 -5.29034 1.09947 1.42745 1.44912 1.53056 1.86423 2.00432 2.52893 3.30446 3.78364 3.85101 3.91323 4.30328 4.36213 4.40224 4.59159 4.64812 4.78767 4.85688 4.88867 4.92525 5.07639 5.11810 5.33765 5.44740 5.62244 5.72555 5.91154 6.30898 6.39399 7.03297 7.15796 7.85128 8.27448 9.20026 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036598 B = 0.009388 C = 0.008548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.886545 B = 2981.889414 C = 3274.930129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.073 3.927 3 C -0.295 4.295 4 C 0.055 3.945 5 C 0.217 3.783 6 N -0.603 5.603 7 C 0.180 3.820 8 C -0.252 4.252 9 H 0.066 0.934 10 C -0.056 4.056 11 N -0.939 5.939 12 Si 0.969 3.031 13 H -0.278 1.278 14 H -0.295 1.295 15 H -0.275 1.275 16 N -0.339 5.339 17 N -0.391 5.391 18 C 0.096 3.904 19 H 0.082 0.918 20 H 0.100 0.900 21 H 0.092 0.908 22 H 0.151 0.849 23 H 0.090 0.910 24 H 0.053 0.947 25 H -0.003 1.003 26 H 0.021 0.979 27 H 0.040 0.960 28 H 0.246 0.754 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 -2.775 -8.987 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 C -0.325 4.325 4 C -0.113 4.113 5 C 0.089 3.911 6 N -0.325 5.325 7 C 0.035 3.965 8 C -0.383 4.383 9 H 0.083 0.917 10 C -0.250 4.250 11 N -0.586 5.586 12 Si 0.797 3.203 13 H -0.204 1.204 14 H -0.222 1.222 15 H -0.200 1.200 16 N -0.162 5.162 17 N -0.175 5.175 18 C -0.045 4.045 19 H 0.101 0.899 20 H 0.118 0.882 21 H 0.111 0.889 22 H 0.169 0.831 23 H 0.109 0.891 24 H 0.071 0.929 25 H 0.015 0.985 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.154 -3.975 -8.819 14.025 hybrid contribution 0.344 0.112 0.951 1.018 sum -9.810 -3.863 -7.868 13.155 Atomic orbital electron populations 1.20534 0.83918 1.05394 1.03978 1.21737 0.96473 0.86789 1.00461 1.21370 0.91679 0.99899 1.19504 1.23880 0.98241 0.92039 0.97178 1.19550 0.89503 0.95533 0.86547 1.44309 1.47992 1.28887 1.11339 1.20561 0.96418 0.87041 0.92471 1.19484 1.10767 1.17844 0.90172 0.91665 1.25754 1.00853 1.01451 0.96989 1.70273 1.33866 1.51689 1.02750 0.85260 0.79602 0.78399 0.77067 1.20431 1.22189 1.19993 1.77286 0.97783 1.13963 1.27180 1.48875 1.03537 1.07337 1.57713 1.22049 1.02191 0.76611 1.03613 0.89938 0.88159 0.88936 0.83101 0.89144 0.92856 0.98486 0.96049 0.94162 0.94451 0.91209 0.85986 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.12 71.24 0.72 -0.84 16 2 C 0.07 2.41 6.93 41.41 0.29 2.70 16 3 C -0.29 -11.36 10.65 21.99 0.23 -11.13 16 4 C 0.06 2.51 6.80 43.10 0.29 2.80 16 5 C 0.22 9.83 6.27 85.63 0.54 10.37 16 6 N -0.60 -32.58 2.91 -731.32 -2.13 -34.71 16 7 C 0.18 9.35 9.02 127.77 1.15 10.51 16 8 C -0.25 -14.96 9.68 84.03 0.81 -14.14 16 9 H 0.07 3.85 7.86 -2.92 -0.02 3.83 16 10 C -0.06 -3.34 5.06 84.86 0.43 -2.91 16 11 N -0.94 -58.76 10.67 21.65 0.23 -58.53 16 12 Si 0.97 48.01 29.58 68.60 2.03 50.04 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 15 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 16 N -0.34 -15.92 12.58 -47.39 -0.60 -16.51 16 17 N -0.39 -14.29 4.01 -356.04 -1.43 -15.72 16 18 C 0.10 2.33 11.27 127.77 1.44 3.77 16 19 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.09 1.27 7.08 -2.39 -0.02 1.26 16 22 H 0.15 5.09 8.06 -2.91 -0.02 5.07 16 23 H 0.09 3.44 7.86 -2.39 -0.02 3.42 16 24 H 0.05 2.40 8.03 -2.39 -0.02 2.39 16 25 H 0.00 -0.19 7.40 -2.38 -0.02 -0.20 16 26 H 0.02 1.17 7.21 -2.39 -0.02 1.15 16 27 H 0.04 1.72 7.83 -2.39 -0.02 1.71 16 28 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.12 1.83 7.05 -2.38 -0.02 1.81 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -77.08 266.13 5.12 -71.96 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.10 Total: 2.36 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.91 Total: 1.11 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -3.92 Total: -125.47 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -77.08 5.12 -71.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610859279.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.740 kcal (2) G-P(sol) polarization free energy of solvation -77.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds