Wall clock time and date at job start Sun Mar 29 2020 22:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47222 * 240.00544 * 3 2 1 5 5 H 1.48493 * 109.46981 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46784 * 120.00271 * 3 2 1 7 7 C 1.37884 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00315 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47512 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.46811 * 111.00125 * 189.99737 * 11 10 9 13 13 C 1.53259 * 109.44506 * 170.78600 * 12 11 10 14 14 C 1.53222 * 108.77138 * 55.50388 * 13 12 11 15 15 C 1.52741 * 117.82753 * 163.16866 * 14 13 12 16 16 C 1.52755 * 117.80058 * 94.16748 * 14 13 12 17 17 C 1.53277 * 114.70939 * 308.90741 * 14 13 12 18 18 C 1.46810 * 111.00308 * 65.31724 * 11 10 9 19 19 H 0.96992 * 119.99991 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46894 * 60.00778 * 9 7 2 21 21 H 1.08996 * 109.47710 * 300.01109 * 9 7 2 22 22 H 1.08994 * 109.47224 * 60.00031 * 10 9 7 23 23 H 1.09005 * 109.46883 * 300.00270 * 10 9 7 24 24 H 1.09001 * 109.47343 * 50.79849 * 12 11 10 25 25 H 1.08992 * 109.48291 * 290.78613 * 12 11 10 26 26 H 1.09002 * 109.61151 * 175.33434 * 13 12 11 27 27 H 1.09004 * 109.61105 * 295.67823 * 13 12 11 28 28 H 1.08998 * 117.50280 * 359.71221 * 15 14 13 29 29 H 1.08999 * 117.50733 * 144.76537 * 15 14 13 30 30 H 1.08999 * 117.50068 * 215.27125 * 16 14 13 31 31 H 1.08998 * 117.50987 * 0.30013 * 16 14 13 32 32 H 1.09002 * 109.46297 * 291.35083 * 17 14 13 33 33 H 1.08995 * 109.76552 * 171.00612 * 17 14 13 34 34 H 1.09005 * 109.47520 * 309.20610 * 18 11 10 35 35 H 1.09004 * 109.47736 * 69.21388 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4166 -6.0649 0.2368 13 6 1.5946 -7.3394 0.4579 14 6 0.6670 -7.5427 -0.7445 15 6 0.0464 -8.9245 -0.9407 16 6 1.1564 -8.4425 -1.8777 17 6 -0.1743 -6.3174 -1.1192 18 6 0.7525 -5.1035 -1.2468 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5568 -0.8904 21 1 0.6246 -2.5572 0.8895 22 1 2.8719 -3.6045 0.8894 23 1 2.8720 -3.6044 -0.8905 24 1 3.0225 -5.8654 1.1206 25 1 3.0673 -6.1975 -0.6275 26 1 2.2638 -8.1946 0.5524 27 1 0.9998 -7.2382 1.3658 28 1 0.3003 -9.6978 -0.2157 29 1 -0.9663 -8.9693 -1.3411 30 1 0.8737 -8.1701 -2.8946 31 1 2.1405 -8.8983 -1.7695 32 1 -0.9139 -6.1327 -0.3401 33 1 -0.6794 -6.4935 -2.0688 34 1 0.1571 -4.2098 -1.4340 35 1 1.4439 -5.2596 -2.0749 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611177669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:06 Heat of formation + Delta-G solvation = 10.084855 kcal Electronic energy + Delta-G solvation = -13897.040800 eV Core-core repulsion = 11701.902576 eV Total energy + Delta-G solvation = -2195.138224 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.26362 -36.24327 -33.10951 -30.88579 -30.56188 -27.95096 -24.25363 -23.10739 -22.50567 -21.61732 -19.96471 -18.30875 -16.42550 -15.24509 -15.18056 -14.67049 -14.48631 -13.91681 -13.43207 -13.36309 -12.49001 -12.33336 -12.07058 -11.67234 -11.54167 -11.40589 -10.99003 -10.90808 -10.82469 -10.54855 -10.25822 -9.86417 -9.78221 -9.54598 -9.20308 -9.09113 -8.29642 -7.61004 -5.96788 -3.99054 3.35240 3.39503 3.41905 3.83174 4.42350 4.60126 4.70921 4.87921 5.00667 5.10689 5.38855 5.51813 5.55087 5.63166 5.73238 5.81457 5.85782 5.90265 6.08250 6.12915 6.18476 6.20756 6.31168 6.37687 6.45622 6.59958 6.63124 7.02049 7.58520 7.67044 7.86025 7.95242 8.13029 8.47219 9.08105 9.64283 11.14634 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.071911 B = 0.006067 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.276562 B = 4614.171242 C = 4797.499888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.059 3.941 13 C -0.076 4.076 14 C -0.115 4.115 15 C -0.179 4.179 16 C -0.180 4.180 17 C -0.077 4.077 18 C 0.058 3.942 19 H 0.261 0.739 20 H 0.017 0.983 21 H 0.024 0.976 22 H 0.060 0.940 23 H 0.017 0.983 24 H 0.070 0.930 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 -14.998 -1.957 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.264 5.264 12 C -0.070 4.070 13 C -0.114 4.114 14 C -0.115 4.115 15 C -0.216 4.216 16 C -0.217 4.217 17 C -0.115 4.115 18 C -0.070 4.070 19 H 0.070 0.930 20 H 0.035 0.965 21 H 0.043 0.957 22 H 0.078 0.922 23 H 0.036 0.964 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.070 -14.860 -1.574 14.981 hybrid contribution 1.073 0.874 -0.722 1.561 sum 2.143 -13.986 -2.296 14.334 Atomic orbital electron populations 1.69960 1.06020 1.26655 1.50663 1.24988 0.94820 0.99128 0.95329 0.86662 0.79579 0.83192 0.78575 1.20321 1.21277 1.20240 1.21172 0.92941 0.91127 1.50884 0.92890 1.19105 0.93996 0.90101 0.97757 1.22306 0.96711 0.88472 0.98802 1.61817 1.27286 1.02325 1.34995 1.22018 0.93982 0.91085 0.99877 1.21187 0.96828 0.96739 0.96617 1.21532 1.00907 0.91450 0.97643 1.22937 0.97865 0.97666 1.03083 1.23003 0.98607 1.04474 0.95590 1.21224 0.97090 0.92335 1.00858 1.22081 0.96357 0.98363 0.90160 0.92962 0.96467 0.95722 0.92176 0.96426 0.91194 0.95702 0.92205 0.90820 0.89172 0.89065 0.89151 0.89286 0.90754 0.92032 0.89432 0.95781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.73 4.90 -27.89 -0.14 0.60 16 10 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 11 N -0.54 -10.21 4.59 -234.45 -1.08 -11.28 16 12 C 0.06 0.92 5.50 -3.74 -0.02 0.90 16 13 C -0.08 -1.01 5.86 -26.48 -0.16 -1.17 16 14 C -0.12 -1.50 2.03 -154.51 -0.31 -1.81 16 15 C -0.18 -1.95 10.00 -26.84 -0.27 -2.21 16 16 C -0.18 -2.05 9.92 -26.83 -0.27 -2.32 16 17 C -0.08 -1.13 5.86 -26.46 -0.16 -1.29 16 18 C 0.06 1.03 5.35 -3.74 -0.02 1.01 16 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 20 H 0.02 0.48 6.35 -51.93 -0.33 0.15 16 21 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 1.29 7.94 -51.93 -0.41 0.88 16 23 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 24 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 25 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.09 1.73 6.07 -51.93 -0.32 1.42 16 35 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 LS Contribution 279.52 15.07 4.21 4.21 Total: -1.00 -29.84 279.52 -8.99 -38.83 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.08 Total: -3.53 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.77 Total: -18.64 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.34 Total: -37.70 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.84 -8.99 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611177669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.915 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds