Wall clock time and date at job start Sun Mar 29 2020 22:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47222 * 240.00544 * 3 2 1 5 5 H 1.48493 * 109.46981 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46784 * 120.00271 * 3 2 1 7 7 C 1.37884 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00315 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47512 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.46811 * 111.00125 * 189.99737 * 11 10 9 13 13 C 1.53259 * 109.44506 * 170.78600 * 12 11 10 14 14 C 1.53222 * 108.77138 * 55.50388 * 13 12 11 15 15 C 1.52741 * 117.82753 * 163.16866 * 14 13 12 16 16 C 1.52755 * 117.80058 * 94.16748 * 14 13 12 17 17 C 1.53277 * 114.70939 * 308.90741 * 14 13 12 18 18 C 1.46810 * 111.00308 * 65.31724 * 11 10 9 19 19 H 0.96992 * 119.99991 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46894 * 60.00778 * 9 7 2 21 21 H 1.08996 * 109.47710 * 300.01109 * 9 7 2 22 22 H 1.08994 * 109.47224 * 60.00031 * 10 9 7 23 23 H 1.09005 * 109.46883 * 300.00270 * 10 9 7 24 24 H 1.09001 * 109.47343 * 50.79849 * 12 11 10 25 25 H 1.08992 * 109.48291 * 290.78613 * 12 11 10 26 26 H 1.09002 * 109.61151 * 175.33434 * 13 12 11 27 27 H 1.09004 * 109.61105 * 295.67823 * 13 12 11 28 28 H 1.08998 * 117.50280 * 359.71221 * 15 14 13 29 29 H 1.08999 * 117.50733 * 144.76537 * 15 14 13 30 30 H 1.08999 * 117.50068 * 215.27125 * 16 14 13 31 31 H 1.08998 * 117.50987 * 0.30013 * 16 14 13 32 32 H 1.09002 * 109.46297 * 291.35083 * 17 14 13 33 33 H 1.08995 * 109.76552 * 171.00612 * 17 14 13 34 34 H 1.09005 * 109.47520 * 309.20610 * 18 11 10 35 35 H 1.09004 * 109.47736 * 69.21388 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4166 -6.0649 0.2368 13 6 1.5946 -7.3394 0.4579 14 6 0.6670 -7.5427 -0.7445 15 6 0.0464 -8.9245 -0.9407 16 6 1.1564 -8.4425 -1.8777 17 6 -0.1743 -6.3174 -1.1192 18 6 0.7525 -5.1035 -1.2468 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5568 -0.8904 21 1 0.6246 -2.5572 0.8895 22 1 2.8719 -3.6045 0.8894 23 1 2.8720 -3.6044 -0.8905 24 1 3.0225 -5.8654 1.1206 25 1 3.0673 -6.1975 -0.6275 26 1 2.2638 -8.1946 0.5524 27 1 0.9998 -7.2382 1.3658 28 1 0.3003 -9.6978 -0.2157 29 1 -0.9663 -8.9693 -1.3411 30 1 0.8737 -8.1701 -2.8946 31 1 2.1405 -8.8983 -1.7695 32 1 -0.9139 -6.1327 -0.3401 33 1 -0.6794 -6.4935 -2.0688 34 1 0.1571 -4.2098 -1.4340 35 1 1.4439 -5.2596 -2.0749 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611177669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:05 Heat of formation + Delta-G solvation = -7.617300 kcal Electronic energy + Delta-G solvation = -13897.808423 eV Core-core repulsion = 11701.902576 eV Total energy + Delta-G solvation = -2195.905847 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44376 -37.59878 -35.18637 -32.52449 -31.89852 -29.59308 -26.18312 -24.43589 -23.54403 -22.91332 -21.70201 -19.45488 -18.55950 -16.59367 -16.56715 -16.20549 -16.07844 -15.33460 -14.95281 -14.65616 -14.20414 -13.73742 -13.58911 -13.25913 -12.99876 -12.76495 -12.49960 -12.37912 -12.32145 -12.04690 -11.84334 -11.59198 -11.28312 -11.15374 -10.79517 -10.52661 -10.46350 -9.12741 -8.19896 -6.31634 1.40027 1.43615 1.51569 2.40490 2.88789 3.13131 3.13638 3.72184 3.84611 4.00529 4.08773 4.26396 4.31105 4.46533 4.56542 4.60898 4.68341 4.76898 4.82185 4.91407 4.94351 5.05532 5.08719 5.12568 5.18081 5.31952 5.35731 5.37008 5.46420 5.67577 5.79187 6.12537 6.35143 6.38479 6.85266 7.37416 8.92227 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.071911 B = 0.006067 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.276562 B = 4614.171242 C = 4797.499888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.552 5.552 12 C 0.057 3.943 13 C -0.069 4.069 14 C -0.139 4.139 15 C -0.161 4.161 16 C -0.173 4.173 17 C -0.071 4.071 18 C 0.060 3.940 19 H 0.264 0.736 20 H -0.006 1.006 21 H -0.009 1.009 22 H 0.063 0.937 23 H 0.016 0.984 24 H 0.074 0.926 25 H 0.029 0.971 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -16.199 -2.133 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.048 4.048 11 N -0.277 5.277 12 C -0.071 4.071 13 C -0.107 4.107 14 C -0.139 4.139 15 C -0.198 4.198 16 C -0.210 4.210 17 C -0.108 4.108 18 C -0.068 4.068 19 H 0.073 0.927 20 H 0.013 0.987 21 H 0.009 0.991 22 H 0.082 0.918 23 H 0.034 0.966 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.244 -16.086 -1.750 16.336 hybrid contribution 0.670 1.213 -0.677 1.542 sum 2.914 -14.873 -2.427 15.349 Atomic orbital electron populations 1.70105 1.07875 1.27880 1.51347 1.25975 0.95748 1.03352 0.94533 0.85469 0.78251 0.77916 0.79207 1.19164 1.20715 1.19084 1.21607 0.93511 0.92323 1.51113 0.92216 1.18928 0.94205 0.91969 0.94985 1.21952 0.95373 0.88636 0.98821 1.61760 1.27938 1.02257 1.35734 1.22134 0.93951 0.90792 1.00187 1.21148 0.96909 0.96166 0.96461 1.21455 1.01983 0.91741 0.98737 1.23016 0.98160 0.95915 1.02689 1.23080 0.99479 1.03248 0.95205 1.21132 0.96448 0.91935 1.01315 1.22033 0.96418 0.98524 0.89803 0.92719 0.98743 0.99056 0.91807 0.96569 0.90707 0.95277 0.89496 0.91565 0.87622 0.88396 0.88982 0.88136 0.92048 0.90512 0.92792 0.95558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -32.07 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.04 2.03 4.90 29.85 0.15 2.17 16 10 C 0.08 3.55 4.90 86.30 0.42 3.98 16 11 N -0.55 -21.14 4.59 -895.67 -4.11 -25.25 16 12 C 0.06 1.71 5.50 86.41 0.48 2.18 16 13 C -0.07 -1.69 5.86 30.76 0.18 -1.51 16 14 C -0.14 -3.32 2.03 -52.18 -0.11 -3.43 16 15 C -0.16 -2.97 10.00 30.52 0.31 -2.67 16 16 C -0.17 -3.41 9.92 30.53 0.30 -3.11 16 17 C -0.07 -2.04 5.86 30.77 0.18 -1.86 16 18 C 0.06 2.18 5.35 86.41 0.46 2.64 16 19 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 20 H -0.01 -0.34 6.35 -2.38 -0.02 -0.35 16 21 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 22 H 0.06 2.76 7.94 -2.39 -0.02 2.74 16 23 H 0.02 0.72 8.13 -2.38 -0.02 0.70 16 24 H 0.07 2.15 7.95 -2.39 -0.02 2.13 16 25 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 26 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 34 H 0.05 2.28 6.07 -2.38 -0.01 2.26 16 35 H 0.03 0.92 8.12 -2.38 -0.02 0.90 16 Total: -1.00 -64.92 279.52 2.30 -62.63 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.03 Total: 6.28 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 3.07 Total: -32.85 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -3.82 Total: -82.96 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -64.92 2.30 -62.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611177669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.010 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds