Wall clock time and date at job start Sun Mar 29 2020 21:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99947 * 2 1 4 4 H 1.48505 * 109.47036 * 273.33283 * 3 2 1 5 5 H 1.48500 * 109.46931 * 33.32669 * 3 2 1 6 6 H 1.48499 * 109.47276 * 153.33143 * 3 2 1 7 7 C 1.38813 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99429 * 341.34515 * 7 2 1 9 9 N 1.36932 * 120.00262 * 161.34504 * 7 2 1 10 10 C 1.47049 * 120.58132 * 328.35912 * 9 7 2 11 11 C 1.53329 * 108.94605 * 235.05750 * 10 9 7 12 12 C 1.51258 * 108.80849 * 308.82648 * 11 10 9 13 13 O 1.20761 * 120.86471 * 234.52798 * 12 11 10 14 14 C 1.51500 * 118.27427 * 54.54882 * 12 11 10 15 15 C 1.46693 * 120.74983 * 148.49394 * 9 7 2 16 16 C 1.53258 * 113.66857 * 257.72165 * 15 9 7 17 17 C 1.53870 * 86.92841 * 89.74172 * 16 15 9 18 18 C 1.53242 * 113.69669 * 355.92593 * 15 9 7 19 19 H 0.97002 * 120.00437 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.57248 * 115.18452 * 10 9 7 21 21 H 1.09000 * 109.58045 * 354.93029 * 10 9 7 22 22 H 1.09001 * 109.58084 * 68.62319 * 11 10 9 23 23 H 1.08998 * 109.58715 * 189.03076 * 11 10 9 24 24 H 1.08999 * 109.75154 * 68.90107 * 14 12 11 25 25 H 1.09001 * 109.75309 * 189.63935 * 14 12 11 26 26 H 1.08993 * 113.64346 * 204.25458 * 16 15 9 27 27 H 1.09001 * 113.63670 * 335.23835 * 16 15 9 28 28 H 1.09002 * 113.60629 * 270.47573 * 17 16 15 29 29 H 1.09005 * 113.60022 * 139.61265 * 17 16 15 30 30 H 1.08999 * 113.63829 * 24.78963 * 18 15 9 31 31 H 1.08993 * 113.64076 * 155.68442 * 18 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4272 2.0871 -1.3978 5 1 1.4845 2.6313 0.7692 6 1 3.5812 1.4209 0.6284 7 6 2.0103 -1.2021 -0.0005 8 1 1.5128 -2.1130 0.2983 9 7 3.3257 -1.2331 -0.3799 10 6 3.8358 -0.2923 -1.3883 11 6 4.4989 -1.0866 -2.5198 12 6 5.4896 -2.0583 -1.9180 13 8 6.6426 -2.0693 -2.2768 14 6 4.9977 -3.0177 -0.8537 15 6 4.2531 -2.2058 0.2081 16 6 5.1711 -1.6099 1.2809 17 6 4.0786 -1.9755 2.3010 18 6 3.6268 -3.0645 1.3120 19 1 -0.4851 0.8400 0.0004 20 1 4.5687 0.3721 -0.9302 21 1 3.0106 0.2958 -1.7898 22 1 3.7385 -1.6366 -3.0743 23 1 5.0194 -0.4026 -3.1901 24 1 4.3223 -3.7478 -1.2996 25 1 5.8458 -3.5293 -0.3985 26 1 6.0999 -2.1634 1.4180 27 1 5.3281 -0.5365 1.1747 28 1 3.3399 -1.1881 2.4504 29 1 4.4710 -2.3722 3.2374 30 1 2.5440 -3.1590 1.2309 31 1 4.1260 -4.0225 1.4567 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000653764210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:10 Heat of formation + Delta-G solvation = -9.992007 kcal Electronic energy + Delta-G solvation = -14659.654927 eV Core-core repulsion = 12327.813010 eV Total energy + Delta-G solvation = -2331.841917 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38700 -39.52784 -36.35064 -34.12442 -31.72056 -30.73377 -26.94220 -25.88665 -24.62259 -23.57719 -20.46461 -19.78682 -18.30504 -17.44900 -16.86555 -16.47711 -15.94624 -15.88391 -15.41898 -14.77563 -14.55985 -14.34864 -13.96554 -13.46258 -13.11218 -12.90356 -12.73477 -12.30256 -12.17423 -11.97161 -11.71530 -11.52695 -11.25493 -11.01977 -10.70051 -10.27029 -8.91534 -8.14427 -5.51678 0.95435 1.28584 1.42071 1.48391 2.41153 2.91843 3.17725 3.23444 3.81689 3.85588 4.01687 4.09790 4.14728 4.19902 4.34100 4.53634 4.68015 4.77523 4.87894 4.90026 4.94680 5.02971 5.03868 5.15070 5.36636 5.49447 5.67588 5.93762 6.22678 6.50572 6.92038 7.61024 8.02061 9.04241 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030561 B = 0.015786 C = 0.012732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.976569 B = 1773.298049 C = 2198.640823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.021 4.021 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.314 1.314 6 H -0.263 1.263 7 C -0.231 4.231 8 H 0.071 0.929 9 N -0.591 5.591 10 C 0.130 3.870 11 C -0.181 4.181 12 C 0.375 3.625 13 O -0.501 6.501 14 C -0.158 4.158 15 C 0.171 3.829 16 C -0.159 4.159 17 C -0.125 4.125 18 C -0.126 4.126 19 H 0.261 0.739 20 H 0.031 0.969 21 H 0.067 0.933 22 H 0.109 0.891 23 H 0.095 0.905 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.490 -4.592 -0.082 10.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.216 4.216 3 Si 0.754 3.246 4 H -0.202 1.202 5 H -0.243 1.243 6 H -0.188 1.188 7 C -0.360 4.360 8 H 0.088 0.912 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.220 4.220 12 C 0.254 3.746 13 O -0.378 6.378 14 C -0.197 4.197 15 C 0.083 3.917 16 C -0.198 4.198 17 C -0.163 4.163 18 C -0.164 4.164 19 H 0.070 0.930 20 H 0.049 0.951 21 H 0.085 0.915 22 H 0.128 0.872 23 H 0.113 0.887 24 H 0.130 0.870 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.933 -4.501 -0.262 10.908 hybrid contribution -0.304 1.346 0.031 1.380 sum 9.630 -3.155 -0.231 10.136 Atomic orbital electron populations 1.69903 1.07155 1.27006 1.55626 1.25831 0.95559 1.00098 1.00143 0.86218 0.79040 0.81681 0.77636 1.20188 1.24326 1.18808 1.18712 0.84676 0.93412 1.39221 0.91161 1.44184 1.06166 1.38217 1.42788 1.21334 0.96993 0.92276 0.88926 1.22740 0.99910 0.99733 0.99645 1.25013 0.87386 0.82178 0.79989 1.90334 1.21549 1.67568 1.58350 1.22637 1.02350 0.98282 0.96467 1.20779 0.90380 0.90522 0.90052 1.23508 0.98088 1.00089 0.98122 1.22561 0.97780 0.98711 0.97220 1.23035 1.01304 0.97565 0.94471 0.93001 0.95119 0.91494 0.87249 0.88653 0.86977 0.87423 0.88093 0.94144 0.92931 0.90045 0.92021 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 13.97 21.65 0.30 -56.50 16 2 C -0.02 -1.14 5.24 84.86 0.44 -0.70 16 3 Si 0.92 44.41 24.41 68.60 1.67 46.09 16 4 H -0.28 -12.54 6.70 99.48 0.67 -11.87 16 5 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.26 -12.30 6.65 99.48 0.66 -11.64 16 7 C -0.23 -11.83 8.68 84.03 0.73 -11.10 16 8 H 0.07 3.89 6.28 -2.91 -0.02 3.87 16 9 N -0.59 -25.25 2.49 -651.69 -1.63 -26.88 16 10 C 0.13 5.21 4.22 86.38 0.36 5.57 16 11 C -0.18 -5.94 6.29 30.14 0.19 -5.75 16 12 C 0.38 12.34 6.69 29.53 0.20 12.53 16 13 O -0.50 -18.42 17.89 -1.45 -0.03 -18.45 16 14 C -0.16 -4.62 5.54 30.10 0.17 -4.46 16 15 C 0.17 5.94 1.05 3.73 0.00 5.94 16 16 C -0.16 -5.16 7.42 30.97 0.23 -4.93 16 17 C -0.13 -4.14 7.78 31.18 0.24 -3.90 16 18 C -0.13 -4.06 6.91 30.97 0.21 -3.85 16 19 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 20 H 0.03 1.24 7.09 -2.38 -0.02 1.22 16 21 H 0.07 2.91 4.80 -2.39 -0.01 2.89 16 22 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 23 H 0.09 2.81 8.14 -2.39 -0.02 2.80 16 24 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 25 H 0.11 2.67 7.89 -2.39 -0.02 2.65 16 26 H 0.10 2.68 7.92 -2.39 -0.02 2.67 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 2.12 7.80 -2.39 -0.02 2.10 16 29 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.06 2.35 5.89 -2.39 -0.01 2.33 16 31 H 0.11 2.69 8.10 -2.39 -0.02 2.67 16 Total: -1.00 -61.58 243.83 4.14 -57.45 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.03 Total: 8.95 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 2.78 Total: -10.65 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -1.32 Total: -83.38 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.03 Total: -18.45 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.09 kcal Total: -61.58 4.14 -57.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000653764210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.453 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds