Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48505 * 109.47272 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47579 * 119.99784 * 3 2 1 6 6 H 1.48507 * 109.47032 * 239.99875 * 3 2 1 7 7 C 1.38806 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00113 * 207.93265 * 7 2 1 9 9 N 1.36932 * 120.00112 * 27.92830 * 7 2 1 10 10 C 1.46504 * 119.99824 * 34.13832 * 9 7 2 11 11 C 1.53001 * 109.46885 * 90.00160 * 10 9 7 12 12 C 1.52997 * 109.47099 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.47411 * 180.02562 * 12 11 10 14 14 C 1.52999 * 117.49560 * 243.62103 * 13 12 11 15 15 C 1.52993 * 117.49943 * 175.00024 * 13 12 11 16 16 C 1.46499 * 120.00017 * 214.14183 * 9 7 2 17 17 C 1.52998 * 117.50354 * 7.35257 * 16 9 7 18 18 C 1.53002 * 117.49697 * 298.72822 * 16 9 7 19 19 H 0.96994 * 120.00068 * 184.89052 * 1 2 3 20 20 H 1.08993 * 109.47094 * 209.99818 * 10 9 7 21 21 H 1.08992 * 109.46857 * 329.99962 * 10 9 7 22 22 H 1.08998 * 109.47416 * 299.99808 * 11 10 9 23 23 H 1.09001 * 109.47352 * 60.00212 * 11 10 9 24 24 H 1.09005 * 109.47101 * 299.99997 * 12 11 10 25 25 H 1.09000 * 109.47429 * 59.99697 * 12 11 10 26 26 H 1.08994 * 115.54510 * 29.32226 * 13 12 11 27 27 H 1.09005 * 117.50001 * 0.02562 * 14 13 12 28 28 H 1.08997 * 117.49791 * 145.01587 * 14 13 12 29 29 H 1.09001 * 117.49953 * 214.97683 * 15 13 12 30 30 H 1.09000 * 117.50101 * 359.97438 * 15 13 12 31 31 H 1.09003 * 115.55340 * 153.06400 * 16 9 7 32 32 H 1.09004 * 117.49562 * 0.02562 * 17 16 9 33 33 H 1.08999 * 117.50073 * 145.02068 * 17 16 9 34 34 H 1.09004 * 117.50007 * 214.97921 * 18 16 9 35 35 H 1.09000 * 117.50044 * 359.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6966 1.2124 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9959 -1.2564 0.4387 9 7 1.4452 -2.3192 -0.5544 10 6 0.5753 -2.1947 -1.7266 11 6 1.4170 -2.3006 -2.9998 12 6 0.5087 -2.1700 -4.2240 13 6 1.3503 -2.2764 -5.4974 14 6 1.4051 -1.0513 -6.4123 15 6 0.6086 -2.2871 -6.8355 16 6 1.7106 -3.6387 0.0241 17 6 2.4828 -3.6891 1.3440 18 6 3.1619 -4.1227 0.0433 19 1 -0.4850 -0.8369 0.0716 20 1 -0.1670 -2.9927 -1.7145 21 1 0.0708 -1.2289 -1.7037 22 1 2.1594 -1.5026 -3.0120 23 1 1.9215 -3.2665 -3.0227 24 1 -0.2341 -2.9678 -4.2121 25 1 0.0044 -1.2039 -4.2010 26 1 2.2508 -2.8850 -5.4161 27 1 0.8420 -0.1694 -6.1068 28 1 2.3420 -0.8537 -6.9330 29 1 1.0215 -2.9026 -7.6348 30 1 -0.4789 -2.2188 -6.8088 31 1 0.9329 -4.3861 -0.1331 32 1 2.7931 -2.7405 1.7821 33 1 2.2131 -4.4697 2.0554 34 1 3.3390 -5.1885 -0.1010 35 1 3.9192 -3.4596 -0.3749 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688058573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = 53.522227 kcal Electronic energy + Delta-G solvation = -13934.895814 eV Core-core repulsion = 11741.641176 eV Total energy + Delta-G solvation = -2193.254638 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.66958 -37.00246 -34.14820 -32.09704 -29.61961 -25.79871 -23.63722 -22.23014 -21.41729 -20.94525 -20.06496 -19.73671 -16.82741 -15.61020 -15.28048 -14.55965 -13.96527 -13.75610 -13.54164 -13.00753 -12.46790 -11.93018 -11.49616 -11.40625 -11.08983 -11.03675 -10.79571 -10.63023 -10.47204 -10.06234 -9.99905 -9.95909 -9.69546 -9.54843 -9.35227 -9.22016 -8.26114 -6.71779 -6.02422 -3.32290 3.48892 3.52920 3.70250 3.99549 4.55858 4.84398 4.91992 5.09908 5.14345 5.22839 5.43885 5.63962 5.73552 5.84198 5.88227 5.94116 6.01913 6.07707 6.16607 6.24710 6.40602 6.41563 6.43293 6.50959 6.57932 6.74391 6.81394 6.94664 7.11762 7.19143 7.38754 8.10477 8.58320 9.14984 9.84202 10.28066 11.15018 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.010426 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.563115 B = 2684.826126 C = 3546.294429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.018 4.018 3 Si 1.059 2.941 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.350 4.350 8 H 0.053 0.947 9 N -0.562 5.562 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.087 4.087 13 C -0.143 4.143 14 C -0.183 4.183 15 C -0.189 4.189 16 C 0.124 3.876 17 C -0.193 4.193 18 C -0.226 4.226 19 H 0.270 0.730 20 H 0.026 0.974 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 -4.744 -7.981 9.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.221 4.221 3 Si 0.889 3.111 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.479 4.479 8 H 0.071 0.929 9 N -0.279 5.279 10 C 0.011 3.989 11 C -0.165 4.165 12 C -0.125 4.125 13 C -0.162 4.162 14 C -0.220 4.220 15 C -0.226 4.226 16 C 0.014 3.986 17 C -0.232 4.232 18 C -0.267 4.267 19 H 0.080 0.920 20 H 0.045 0.955 21 H 0.099 0.901 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.500 -3.036 -8.029 8.714 hybrid contribution 0.450 -1.779 0.090 1.837 sum 1.950 -4.814 -7.939 9.487 Atomic orbital electron populations 1.70774 1.06829 1.30239 1.46201 1.25841 0.96316 1.01556 0.98375 0.83609 0.75015 0.76141 0.76352 1.21065 1.21917 1.21912 1.19741 0.99315 0.88880 1.39924 0.92933 1.43522 1.55834 1.00743 1.27836 1.21012 0.91787 1.01383 0.84676 1.22037 0.99069 1.00936 0.94438 1.21171 0.97445 1.01380 0.92507 1.22417 1.01257 1.01221 0.91267 1.23005 1.01899 0.92759 1.04311 1.22941 0.98983 1.01964 0.98680 1.21100 0.91093 0.89828 0.96553 1.23041 1.06852 1.02230 0.91062 1.23359 1.00930 0.99086 1.03301 0.91950 0.95542 0.90076 0.92058 0.93570 0.92423 0.92020 0.88206 0.88786 0.89333 0.89413 0.89074 0.89909 0.88282 0.90776 0.90980 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 12.20 55.49 0.68 -25.87 16 2 C -0.02 -0.49 4.81 -17.43 -0.08 -0.58 16 3 Si 1.06 25.24 30.00 -169.99 -5.10 20.14 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.35 -9.64 8.28 -15.06 -0.12 -9.77 16 8 H 0.05 1.49 7.00 -52.49 -0.37 1.12 16 9 N -0.56 -14.07 2.59 -165.67 -0.43 -14.50 16 10 C 0.14 3.17 4.89 -4.04 -0.02 3.15 16 11 C -0.13 -2.50 5.50 -26.73 -0.15 -2.65 16 12 C -0.09 -1.45 5.49 -26.73 -0.15 -1.60 16 13 C -0.14 -2.10 5.74 -90.62 -0.52 -2.62 16 14 C -0.18 -2.44 10.18 -26.73 -0.27 -2.71 16 15 C -0.19 -2.34 10.25 -26.74 -0.27 -2.61 16 16 C 0.12 2.72 6.58 -67.93 -0.45 2.28 16 17 C -0.19 -4.00 9.77 -26.73 -0.26 -4.26 16 18 C -0.23 -4.49 10.29 -26.73 -0.28 -4.76 16 19 H 0.27 8.03 7.18 -40.82 -0.29 7.73 16 20 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 21 H 0.08 2.10 5.33 -51.93 -0.28 1.83 16 22 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.06 1.07 7.88 -51.93 -0.41 0.67 16 26 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 27 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.69 8.13 -51.93 -0.42 1.27 16 32 H 0.10 2.27 6.62 -51.93 -0.34 1.93 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -28.66 287.48 -9.06 -37.72 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.97 Total: 4.31 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -2.57 Total: -26.14 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.25 Total: -40.37 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.14 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.66 -9.06 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688058573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.243 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds