Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48500 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47052 * 300.00036 * 3 2 1 6 6 H 1.48498 * 109.46916 * 60.00159 * 3 2 1 7 7 C 1.37872 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 119.29580 * 250.79734 * 13 11 10 15 15 C 1.53002 * 60.38082 * 248.69377 * 14 13 11 16 16 H 1.08997 * 119.75612 * 111.11622 * 15 14 13 17 17 C 1.54265 * 118.19944 * 266.38534 * 15 14 13 18 18 C 1.54902 * 104.19499 * 87.78673 * 17 15 14 19 19 C 1.54265 * 117.41286 * 46.45438 * 13 11 10 20 20 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 22 22 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 23 23 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 24 24 H 1.08996 * 117.46414 * 356.29165 * 14 13 11 25 25 H 1.09007 * 117.45875 * 141.09356 * 14 13 11 26 26 H 1.08998 * 110.49040 * 206.46207 * 17 15 14 27 27 H 1.09000 * 110.48869 * 328.97720 * 17 15 14 28 28 H 1.08997 * 110.75466 * 80.37286 * 18 17 15 29 29 H 1.09002 * 110.75241 * 203.55947 * 18 17 15 30 30 H 1.09009 * 110.48461 * 235.04572 * 19 13 11 31 31 H 1.08996 * 110.48427 * 357.68842 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 -0.0052 14 6 2.8801 -6.8813 -1.2671 15 6 2.2542 -7.4910 -0.0112 16 1 1.1931 -7.7398 -0.0018 17 6 3.1725 -8.2596 0.9614 18 6 3.7126 -7.1669 1.9174 19 6 3.9167 -5.9567 0.9818 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 3.1569 -3.4354 0.0009 24 1 2.2164 -6.6605 -2.1030 25 1 3.8838 -7.2089 -1.5384 26 1 2.6022 -9.0042 1.5166 27 1 3.9909 -8.7335 0.4194 28 1 2.9780 -6.9294 2.6868 29 1 4.6546 -7.4793 2.3680 30 1 4.8632 -6.0589 0.4507 31 1 3.8909 -5.0212 1.5406 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693230699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = -29.100280 kcal Electronic energy + Delta-G solvation = -13543.092931 eV Core-core repulsion = 11210.422418 eV Total energy + Delta-G solvation = -2332.670514 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.08778 -37.51901 -34.16242 -32.30015 -31.58437 -28.69943 -27.00021 -23.61667 -22.40225 -21.24062 -20.13668 -18.79235 -17.12857 -15.93956 -15.30375 -14.96298 -14.55703 -14.02514 -13.70158 -13.23646 -13.00566 -12.72594 -12.02677 -11.84872 -11.47867 -11.13744 -11.03672 -10.92454 -10.90546 -10.88197 -10.31143 -10.22025 -9.54319 -9.35238 -8.92676 -8.72750 -7.84792 -6.15858 -4.22680 3.17990 3.24041 3.30932 3.34262 3.83535 4.09735 4.36831 4.53644 4.74170 4.88953 5.20248 5.26172 5.38473 5.46067 5.51546 5.61286 5.71806 5.79673 5.84394 6.00800 6.11730 6.18778 6.28341 6.41880 7.33071 7.47654 7.53088 7.69174 7.98251 8.67355 8.80380 9.15153 9.44328 10.94521 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057396 B = 0.006717 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.726017 B = 4167.460789 C = 4382.323104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.539 3.461 12 O -0.558 6.558 13 C -0.174 4.174 14 C -0.124 4.124 15 C -0.136 4.136 16 H 0.117 0.883 17 C -0.094 4.094 18 C -0.123 4.123 19 C -0.086 4.086 20 H 0.265 0.735 21 H 0.026 0.974 22 H 0.027 0.973 23 H 0.391 0.609 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 -12.658 0.924 15.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.354 5.354 11 C 0.324 3.676 12 O -0.438 6.438 13 C -0.177 4.177 14 C -0.161 4.161 15 C -0.155 4.155 16 H 0.135 0.865 17 C -0.132 4.132 18 C -0.160 4.160 19 C -0.124 4.124 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.224 0.776 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.321 -12.635 0.942 15.158 hybrid contribution 0.752 1.163 -0.020 1.385 sum 9.073 -11.472 0.921 14.655 Atomic orbital electron populations 1.69985 1.06127 1.27187 1.49069 1.24959 0.94911 0.99472 0.94714 0.86356 0.79839 0.82941 0.77754 1.19617 1.20786 1.20781 1.21270 0.93312 0.90428 1.53001 0.91830 1.19121 0.88358 0.82021 0.97709 1.46382 1.11126 1.05859 1.72016 1.19242 0.87937 0.83447 0.76983 1.90643 1.16635 1.84940 1.51548 1.22479 0.99929 0.92962 1.02326 1.23036 1.02103 0.99955 0.91023 1.23303 1.00433 0.92910 0.98822 0.86488 1.21973 0.97994 0.97191 0.96035 1.22584 1.00891 0.94582 0.97993 1.21808 0.95682 0.99260 0.95631 0.92502 0.95583 0.95550 0.77622 0.88058 0.88439 0.91170 0.91355 0.91238 0.91203 0.91084 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 10 N -0.71 -15.63 5.39 -61.47 -0.33 -15.96 16 11 C 0.54 11.50 7.40 -10.98 -0.08 11.42 16 12 O -0.56 -14.21 16.79 5.55 0.09 -14.12 16 13 C -0.17 -2.73 2.67 -154.54 -0.41 -3.14 16 14 C -0.12 -1.64 9.87 -26.73 -0.26 -1.90 16 15 C -0.14 -1.88 6.55 -89.50 -0.59 -2.46 16 16 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 17 C -0.09 -1.02 6.63 -25.07 -0.17 -1.18 16 18 C -0.12 -1.37 6.88 -25.03 -0.17 -1.54 16 19 C -0.09 -1.10 6.19 -25.37 -0.16 -1.26 16 20 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.39 7.53 7.91 -40.82 -0.32 7.21 16 24 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 31 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 LS Contribution 265.58 15.07 4.00 4.00 Total: -1.00 -32.08 265.58 -7.29 -39.36 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.48 Total: 3.34 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.28 Total: -6.93 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.41 Total: -41.67 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.08 -7.29 -39.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693230699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.263 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds