Wall clock time and date at job start Sun Mar 29 2020 21:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48500 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47052 * 300.00036 * 3 2 1 6 6 H 1.48498 * 109.46916 * 60.00159 * 3 2 1 7 7 C 1.37872 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00250 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 119.29580 * 250.79734 * 13 11 10 15 15 C 1.53002 * 60.38082 * 248.69377 * 14 13 11 16 16 H 1.08997 * 119.75612 * 111.11622 * 15 14 13 17 17 C 1.54265 * 118.19944 * 266.38534 * 15 14 13 18 18 C 1.54902 * 104.19499 * 87.78673 * 17 15 14 19 19 C 1.54265 * 117.41286 * 46.45438 * 13 11 10 20 20 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46956 * 59.99427 * 9 7 2 22 22 H 1.09001 * 109.46317 * 299.99874 * 9 7 2 23 23 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 24 24 H 1.08996 * 117.46414 * 356.29165 * 14 13 11 25 25 H 1.09007 * 117.45875 * 141.09356 * 14 13 11 26 26 H 1.08998 * 110.49040 * 206.46207 * 17 15 14 27 27 H 1.09000 * 110.48869 * 328.97720 * 17 15 14 28 28 H 1.08997 * 110.75466 * 80.37286 * 18 17 15 29 29 H 1.09002 * 110.75241 * 203.55947 * 18 17 15 30 30 H 1.09009 * 110.48461 * 235.04572 * 19 13 11 31 31 H 1.08996 * 110.48427 * 357.68842 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0011 13 6 2.7333 -6.0287 -0.0052 14 6 2.8801 -6.8813 -1.2671 15 6 2.2542 -7.4910 -0.0112 16 1 1.1931 -7.7398 -0.0018 17 6 3.1725 -8.2596 0.9614 18 6 3.7126 -7.1669 1.9174 19 6 3.9167 -5.9567 0.9818 20 1 -0.4851 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 3.1569 -3.4354 0.0009 24 1 2.2164 -6.6605 -2.1030 25 1 3.8838 -7.2089 -1.5384 26 1 2.6022 -9.0042 1.5166 27 1 3.9909 -8.7335 0.4194 28 1 2.9780 -6.9294 2.6868 29 1 4.6546 -7.4793 2.3680 30 1 4.8632 -6.0589 0.4507 31 1 3.8909 -5.0212 1.5406 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693230699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:04 Heat of formation + Delta-G solvation = -51.101063 kcal Electronic energy + Delta-G solvation = -13544.046957 eV Core-core repulsion = 11210.422418 eV Total energy + Delta-G solvation = -2333.624539 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43642 -39.09129 -36.20111 -34.38723 -32.57661 -30.16061 -28.69748 -25.39536 -23.74277 -22.76313 -21.19868 -20.45405 -18.69701 -17.77599 -17.06056 -16.46456 -16.27193 -15.57454 -15.25459 -14.42723 -14.19307 -14.05061 -13.91145 -13.86918 -12.96542 -12.79433 -12.72083 -12.25383 -12.03822 -11.96620 -11.82708 -11.49950 -11.32842 -10.85046 -10.63534 -10.61476 -9.89004 -8.32365 -6.49882 1.41606 1.43296 1.57053 1.59384 2.28505 2.49793 2.68353 3.02441 3.50734 3.65782 3.83641 4.00633 4.28615 4.45209 4.51079 4.68464 4.74361 4.81896 4.96870 5.00844 5.10413 5.16987 5.19105 5.22102 5.31862 5.44364 5.49509 5.64766 5.80428 6.60935 6.86139 7.19452 7.43289 8.80440 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057396 B = 0.006717 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.726017 B = 4167.460789 C = 4382.323104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.989 3.011 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.265 3.735 10 N -0.700 5.700 11 C 0.532 3.468 12 O -0.610 6.610 13 C -0.195 4.195 14 C -0.104 4.104 15 C -0.136 4.136 16 H 0.092 0.908 17 C -0.085 4.085 18 C -0.121 4.121 19 C -0.081 4.081 20 H 0.270 0.730 21 H -0.014 1.014 22 H -0.014 1.014 23 H 0.408 0.592 24 H 0.086 0.914 25 H 0.139 0.861 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.772 -13.278 0.924 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.142 3.858 10 N -0.349 5.349 11 C 0.320 3.680 12 O -0.493 6.493 13 C -0.199 4.199 14 C -0.141 4.141 15 C -0.155 4.155 16 H 0.111 0.889 17 C -0.122 4.122 18 C -0.159 4.159 19 C -0.119 4.119 20 H 0.078 0.922 21 H 0.004 0.996 22 H 0.004 0.996 23 H 0.243 0.757 24 H 0.105 0.895 25 H 0.157 0.843 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.784 -13.284 0.943 17.782 hybrid contribution -0.414 1.297 -0.033 1.362 sum 11.369 -11.987 0.910 16.546 Atomic orbital electron populations 1.70148 1.08391 1.28634 1.49932 1.26120 0.95808 1.04072 0.93678 0.85056 0.79060 0.76974 0.77790 1.17531 1.20302 1.20294 1.21632 0.94304 0.90431 1.53028 0.89772 1.18575 0.88740 0.84510 0.93929 1.46138 1.11140 1.05319 1.72290 1.20338 0.88431 0.84369 0.74881 1.90605 1.19476 1.85731 1.53526 1.22465 1.00390 0.91324 1.05672 1.23190 1.03815 0.97447 0.89647 1.23498 1.00271 0.91698 1.00025 0.88947 1.22009 0.98162 0.96811 0.95232 1.22608 1.01959 0.93948 0.97339 1.21870 0.95445 0.99421 0.95157 0.92153 0.99632 0.99650 0.75651 0.89542 0.84333 0.90260 0.88343 0.93204 0.88017 0.87908 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.99 42.85 29.54 68.60 2.03 44.88 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.56 -31.17 9.28 25.60 0.24 -30.94 16 8 H 0.08 4.27 7.60 -2.91 -0.02 4.24 16 9 C 0.27 15.28 5.43 85.64 0.46 15.75 16 10 N -0.70 -32.01 5.39 -466.79 -2.52 -34.53 16 11 C 0.53 23.54 7.40 87.66 0.65 24.19 16 12 O -0.61 -33.10 16.79 -3.04 -0.05 -33.15 16 13 C -0.20 -5.94 2.67 -52.20 -0.14 -6.08 16 14 C -0.10 -2.51 9.87 30.60 0.30 -2.20 16 15 C -0.14 -3.56 6.55 -10.07 -0.07 -3.62 16 16 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 17 C -0.08 -1.52 6.63 31.67 0.21 -1.31 16 18 C -0.12 -2.31 6.88 31.70 0.22 -2.09 16 19 C -0.08 -1.86 6.19 31.47 0.19 -1.66 16 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 21 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 22 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 23 H 0.41 15.67 7.91 -92.71 -0.73 14.94 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.14 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 Total: -1.00 -73.94 265.58 2.66 -71.28 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.38 Total: 16.00 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 2.53 Total: -7.36 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -2.23 Total: -91.65 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.05 Total: -33.15 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -73.94 2.66 -71.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693230699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.176 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds