Wall clock time and date at job start Sun Mar 29 2020 21:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34666 * 126.59444 * 2 1 4 4 N 1.34126 * 108.02240 * 179.97438 * 3 2 1 5 5 C 1.30494 * 109.25549 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.64842 * 180.26194 * 5 4 3 7 7 N 1.46501 * 109.47494 * 274.69179 * 6 5 4 8 8 C 1.34770 * 120.00140 * 180.02562 * 7 6 5 9 9 O 1.21693 * 120.00124 * 359.97438 * 8 7 6 10 10 C 1.46374 * 120.00132 * 180.02562 * 8 7 6 11 11 H 1.08004 * 119.99964 * 359.97438 * 10 8 7 12 12 C 1.40045 * 120.00255 * 179.97438 * 10 8 7 13 13 N 1.30675 * 120.00034 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00168 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47226 * 59.99832 * 14 12 10 16 16 H 1.48498 * 109.47240 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47028 * 300.00326 * 14 12 10 18 18 N 1.35044 * 108.70229 * 0.02562 * 5 4 3 19 19 H 0.97000 * 126.39445 * 180.02562 * 18 5 4 20 20 H 1.08999 * 109.46995 * 270.04298 * 1 2 3 21 21 H 1.08996 * 109.46974 * 30.04358 * 1 2 3 22 22 H 1.09002 * 109.46961 * 150.04256 * 1 2 3 23 23 H 1.07998 * 125.98447 * 359.93055 * 3 2 1 24 24 H 1.09005 * 109.47095 * 34.69478 * 6 5 4 25 25 H 1.08994 * 109.47195 * 154.69227 * 6 5 4 26 26 H 0.97006 * 119.99751 * 359.97438 * 7 6 5 27 27 H 0.96997 * 120.00074 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6540 0.0006 5 6 3.5968 -0.6508 0.0004 6 6 4.8318 -1.5145 0.0065 7 7 5.3038 -1.7015 -1.3678 8 6 6.4021 -2.4447 -1.6078 9 8 7.0021 -2.9601 -0.6830 10 6 6.8740 -2.6311 -2.9808 11 1 6.3418 -2.1734 -3.8016 12 6 8.0156 -3.4030 -3.2302 13 7 8.6599 -3.9564 -2.2371 14 14 8.6174 -3.6414 -4.9824 15 1 8.9401 -2.3204 -5.5791 16 1 9.8347 -4.4919 -4.9763 17 1 7.5561 -4.3009 -5.7848 18 7 2.3229 -1.0991 -0.0009 19 1 2.0392 -2.0267 -0.0010 20 1 -0.3633 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9865 2.1116 -0.0011 24 1 5.6108 -1.0304 0.5955 25 1 4.5949 -2.4841 0.4443 26 1 4.8253 -1.2910 -2.1050 27 1 9.4504 -4.4913 -2.4099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693505303.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:02 Heat of formation + Delta-G solvation = 9.007392 kcal Electronic energy + Delta-G solvation = -12973.496305 eV Core-core repulsion = 10538.937921 eV Total energy + Delta-G solvation = -2434.558384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.94272 -37.25466 -33.66896 -32.63176 -32.32779 -31.30657 -28.07749 -26.06148 -24.28434 -20.99823 -20.44922 -19.68100 -17.73812 -16.70225 -15.43934 -15.16064 -14.42005 -14.10552 -13.95690 -13.63327 -13.03620 -12.84854 -12.69384 -12.45842 -11.92106 -11.45658 -11.17228 -10.90296 -10.46565 -10.26050 -9.87315 -9.79538 -8.85040 -8.23931 -7.60759 -7.57851 -6.19334 -4.65000 2.07799 3.16672 3.17378 3.21351 3.22744 3.26570 4.12172 4.56777 4.65487 4.91826 5.01944 5.08806 5.36458 5.44209 5.54967 5.68354 5.80425 6.15107 6.31680 6.38109 6.87520 7.43185 7.47327 7.87528 8.01876 8.26768 8.31077 9.01603 9.48311 10.57750 10.75656 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.062695 B = 0.006231 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.501992 B = 4492.248872 C = 4677.336916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.037 4.037 3 C -0.028 4.028 4 N -0.478 5.478 5 C 0.212 3.788 6 C 0.216 3.784 7 N -0.761 5.761 8 C 0.556 3.444 9 O -0.580 6.580 10 C -0.543 4.543 11 H 0.068 0.932 12 C 0.087 3.913 13 N -0.768 5.768 14 Si 0.910 3.090 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.268 1.268 18 N -0.559 5.559 19 H 0.418 0.582 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.167 0.833 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.383 0.617 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.246 4.789 1.656 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.153 4.153 3 C -0.177 4.177 4 N -0.198 5.198 5 C -0.052 4.052 6 C 0.089 3.911 7 N -0.419 5.419 8 C 0.361 3.639 9 O -0.463 6.463 10 C -0.580 4.580 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.734 3.266 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.193 1.193 18 N -0.163 5.163 19 H 0.256 0.744 20 H 0.088 0.912 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.184 0.816 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.214 0.786 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.919 4.835 2.434 14.007 hybrid contribution -0.886 -0.782 -1.201 1.685 sum -13.805 4.053 1.233 14.440 Atomic orbital electron populations 1.20176 0.87306 1.03213 1.02466 1.21267 0.94344 0.87392 1.12284 1.22131 0.88518 0.98444 1.08578 1.70301 1.22152 1.08353 1.18951 1.23582 0.85850 0.91133 1.04675 1.19166 0.88171 0.94947 0.88783 1.46195 1.32829 1.58232 1.04599 1.18232 0.77812 0.77313 0.90585 1.90608 1.57350 1.52100 1.46218 1.20823 1.12133 1.33740 0.91316 0.91416 1.25708 0.95604 0.93759 0.98174 1.70007 1.14342 1.23456 1.31825 0.86405 0.78410 0.78894 0.82869 1.19213 1.20538 1.19327 1.43238 1.07045 1.09366 1.56665 0.74424 0.91163 0.90077 0.91851 0.81580 0.90012 0.91816 0.78553 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.44 36.01 0.38 -0.20 15 2 C -0.04 -0.46 7.24 -81.60 -0.59 -1.05 15 3 C -0.03 -0.41 11.79 -17.81 -0.21 -0.62 15 4 N -0.48 -8.70 11.25 -10.82 -0.12 -8.82 15 5 C 0.21 3.64 7.52 -155.42 -1.17 2.47 15 6 C 0.22 4.30 6.30 -5.19 -0.03 4.27 15 7 N -0.76 -17.54 5.54 -62.90 -0.35 -17.88 15 8 C 0.56 15.96 7.75 -12.99 -0.10 15.86 15 9 O -0.58 -18.76 15.02 5.20 0.08 -18.69 15 10 C -0.54 -15.49 9.54 -35.63 -0.34 -15.83 15 11 H 0.07 1.78 7.85 -52.48 -0.41 1.36 15 12 C 0.09 2.45 5.50 -17.37 -0.10 2.36 15 13 N -0.77 -23.08 11.83 55.55 0.66 -22.42 15 14 Si 0.91 20.25 29.56 -169.99 -5.02 15.23 15 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 18 N -0.56 -7.55 6.15 -6.54 -0.04 -7.59 15 19 H 0.42 4.51 8.96 -40.82 -0.37 4.15 15 20 H 0.07 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.17 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.08 1.76 8.14 -51.93 -0.42 1.33 15 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.38 8.16 8.44 -40.82 -0.34 7.81 15 27 H 0.27 7.34 8.29 -40.82 -0.34 7.00 15 LS Contribution 249.06 15.07 3.75 3.75 Total: -1.00 -35.48 249.06 -6.00 -41.48 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.79 Total: 7.67 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.16 Total: 7.26 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.15 Total: -56.71 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.69 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -35.48 -6.00 -41.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693505303.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.492 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds