Wall clock time and date at job start Sun Mar 29 2020 21:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34666 * 126.59444 * 2 1 4 4 N 1.34126 * 108.02240 * 179.97438 * 3 2 1 5 5 C 1.30494 * 109.25549 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.64842 * 180.26194 * 5 4 3 7 7 N 1.46501 * 109.47494 * 274.69179 * 6 5 4 8 8 C 1.34770 * 120.00140 * 180.02562 * 7 6 5 9 9 O 1.21693 * 120.00124 * 359.97438 * 8 7 6 10 10 C 1.46374 * 120.00132 * 180.02562 * 8 7 6 11 11 H 1.08004 * 119.99964 * 359.97438 * 10 8 7 12 12 C 1.40045 * 120.00255 * 179.97438 * 10 8 7 13 13 N 1.30675 * 120.00034 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00168 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47226 * 59.99832 * 14 12 10 16 16 H 1.48498 * 109.47240 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47028 * 300.00326 * 14 12 10 18 18 N 1.35044 * 108.70229 * 0.02562 * 5 4 3 19 19 H 0.97000 * 126.39445 * 180.02562 * 18 5 4 20 20 H 1.08999 * 109.46995 * 270.04298 * 1 2 3 21 21 H 1.08996 * 109.46974 * 30.04358 * 1 2 3 22 22 H 1.09002 * 109.46961 * 150.04256 * 1 2 3 23 23 H 1.07998 * 125.98447 * 359.93055 * 3 2 1 24 24 H 1.09005 * 109.47095 * 34.69478 * 6 5 4 25 25 H 1.08994 * 109.47195 * 154.69227 * 6 5 4 26 26 H 0.97006 * 119.99751 * 359.97438 * 7 6 5 27 27 H 0.96997 * 120.00074 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6540 0.0006 5 6 3.5968 -0.6508 0.0004 6 6 4.8318 -1.5145 0.0065 7 7 5.3038 -1.7015 -1.3678 8 6 6.4021 -2.4447 -1.6078 9 8 7.0021 -2.9601 -0.6830 10 6 6.8740 -2.6311 -2.9808 11 1 6.3418 -2.1734 -3.8016 12 6 8.0156 -3.4030 -3.2302 13 7 8.6599 -3.9564 -2.2371 14 14 8.6174 -3.6414 -4.9824 15 1 8.9401 -2.3204 -5.5791 16 1 9.8347 -4.4919 -4.9763 17 1 7.5561 -4.3009 -5.7848 18 7 2.3229 -1.0991 -0.0009 19 1 2.0392 -2.0267 -0.0010 20 1 -0.3633 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9865 2.1116 -0.0011 24 1 5.6108 -1.0304 0.5955 25 1 4.5949 -2.4841 0.4443 26 1 4.8253 -1.2910 -2.1050 27 1 9.4504 -4.4913 -2.4099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693505303.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:01 Heat of formation + Delta-G solvation = -18.972822 kcal Electronic energy + Delta-G solvation = -12974.709619 eV Core-core repulsion = 10538.937921 eV Total energy + Delta-G solvation = -2435.771697 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.11565 -39.37363 -35.51126 -34.50238 -33.76520 -32.51257 -29.70168 -27.81986 -25.67738 -22.19276 -21.94602 -21.45702 -19.51860 -18.17801 -17.45627 -16.64930 -16.02333 -15.70049 -15.57539 -14.87465 -14.49843 -14.28168 -13.70509 -13.47893 -13.37121 -13.18608 -13.08827 -12.69413 -12.63959 -12.05330 -11.07416 -11.00042 -10.92732 -10.00708 -9.59874 -9.22606 -8.30321 -6.88121 0.92684 1.40745 1.44148 1.56105 1.99905 2.08847 2.26923 2.44683 3.20027 3.41342 3.59759 4.00332 4.17759 4.36487 4.43894 4.62870 4.80746 4.85816 5.13294 5.30441 5.31712 5.77898 5.82655 6.06769 6.20650 6.40970 6.84643 7.07994 7.44366 8.43299 8.64202 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.062695 B = 0.006231 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.501992 B = 4492.248872 C = 4677.336916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.007 4.007 3 C -0.057 4.057 4 N -0.511 5.511 5 C 0.184 3.816 6 C 0.224 3.776 7 N -0.749 5.749 8 C 0.540 3.460 9 O -0.628 6.628 10 C -0.573 4.573 11 H 0.086 0.914 12 C 0.029 3.971 13 N -0.820 5.820 14 Si 1.000 3.000 15 H -0.257 1.257 16 H -0.272 1.272 17 H -0.253 1.253 18 N -0.547 5.547 19 H 0.431 0.569 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.078 0.922 23 H 0.191 0.809 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.392 0.608 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.308 5.186 0.107 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 C -0.205 4.205 4 N -0.232 5.232 5 C -0.080 4.080 6 C 0.098 3.902 7 N -0.404 5.404 8 C 0.345 3.655 9 O -0.515 6.515 10 C -0.609 4.609 11 H 0.104 0.896 12 C -0.186 4.186 13 N -0.449 5.449 14 Si 0.819 3.181 15 H -0.181 1.181 16 H -0.197 1.197 17 H -0.177 1.177 18 N -0.152 5.152 19 H 0.271 0.729 20 H 0.107 0.893 21 H 0.119 0.881 22 H 0.097 0.903 23 H 0.208 0.792 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.225 0.775 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.039 5.248 0.887 15.953 hybrid contribution -0.387 -0.829 -0.642 1.117 sum -15.426 4.419 0.245 16.048 Atomic orbital electron populations 1.20391 0.83464 1.04942 1.04168 1.22021 0.96280 0.86050 1.08122 1.22655 0.87527 1.00383 1.09953 1.70185 1.24731 1.08977 1.19288 1.22734 0.86150 0.90762 1.08323 1.18960 0.89116 0.95604 0.86532 1.45848 1.31423 1.56731 1.06406 1.18591 0.78725 0.77540 0.90625 1.90561 1.59242 1.54244 1.47462 1.21367 1.13172 1.34520 0.91840 0.89612 1.26980 0.95237 0.92585 1.03823 1.70168 1.15137 1.24345 1.35226 0.85041 0.78124 0.79348 0.75591 1.18066 1.19706 1.17681 1.43176 1.05944 1.10543 1.55506 0.72882 0.89309 0.88139 0.90345 0.79224 0.92422 0.91376 0.77459 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.44 71.24 0.74 -0.08 15 2 C -0.01 -0.16 7.24 40.95 0.30 0.13 15 3 C -0.06 -1.56 11.79 83.52 0.98 -0.58 15 4 N -0.51 -18.50 11.25 -188.14 -2.12 -20.61 15 5 C 0.18 6.32 7.52 138.13 1.04 7.35 15 6 C 0.22 9.24 6.30 85.63 0.54 9.78 15 7 N -0.75 -35.35 5.54 -471.14 -2.61 -37.96 15 8 C 0.54 31.99 7.75 86.36 0.67 32.66 15 9 O -0.63 -42.40 15.02 -4.33 -0.06 -42.46 15 10 C -0.57 -32.99 9.54 24.83 0.24 -32.75 15 11 H 0.09 4.46 7.85 -2.91 -0.02 4.43 15 12 C 0.03 1.64 5.50 85.30 0.47 2.11 15 13 N -0.82 -50.40 11.83 21.83 0.26 -50.14 15 14 Si 1.00 41.17 29.56 68.60 2.03 43.20 15 15 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 16 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 17 H -0.25 -9.72 7.11 99.48 0.71 -9.01 15 18 N -0.55 -13.85 6.15 -174.60 -1.07 -14.93 15 19 H 0.43 8.47 8.96 -92.71 -0.83 7.64 15 20 H 0.09 0.80 8.14 -2.39 -0.02 0.78 15 21 H 0.10 0.85 8.14 -2.39 -0.02 0.83 15 22 H 0.08 0.73 8.14 -2.39 -0.02 0.71 15 23 H 0.19 3.99 8.06 -2.91 -0.02 3.96 15 24 H 0.06 2.63 8.14 -2.38 -0.02 2.62 15 25 H 0.07 2.71 8.14 -2.39 -0.02 2.69 15 26 H 0.39 16.88 8.44 -92.70 -0.78 16.10 15 27 H 0.28 15.35 8.29 -92.71 -0.77 14.58 15 Total: -1.00 -79.33 249.06 0.99 -78.34 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.41 Total: 25.94 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 4.98 Total: 18.62 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.54 Total: -123.64 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.06 Total: -42.46 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -79.33 0.99 -78.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693505303.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.370 kcal (2) G-P(sol) polarization free energy of solvation -79.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds