Wall clock time and date at job start Sun Mar 29 2020 21:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32997 * 1 3 3 C 1.47097 * 119.99737 * 2 1 4 4 O 1.21612 * 120.00442 * 354.70750 * 3 2 1 5 5 N 1.34777 * 120.00024 * 174.70489 * 3 2 1 6 6 C 1.46925 * 120.63039 * 5.18553 * 5 3 2 7 7 C 1.53196 * 108.77618 * 233.60933 * 6 5 3 8 8 C 1.53037 * 109.30866 * 305.36200 * 7 6 5 9 9 C 1.53043 * 109.54307 * 61.36760 * 8 7 6 10 10 H 1.09004 * 109.49759 * 58.61030 * 9 8 7 11 11 C 1.50697 * 109.50057 * 178.68380 * 9 8 7 12 12 H 1.07994 * 120.00094 * 25.27888 * 11 9 8 13 13 C 1.37874 * 119.99483 * 205.55080 * 11 9 8 14 14 N 1.31517 * 119.99631 * 184.82736 * 13 11 9 15 15 Si 1.86799 * 120.00569 * 4.83210 * 13 11 9 16 16 H 1.48493 * 109.47429 * 94.85084 * 15 13 11 17 17 H 1.48496 * 109.47191 * 214.85556 * 15 13 11 18 18 H 1.48503 * 109.46650 * 334.85097 * 15 13 11 19 19 C 1.46928 * 120.63377 * 185.18252 * 5 3 2 20 20 H 1.08000 * 120.00111 * 179.97438 * 1 2 3 21 21 H 1.07995 * 119.99940 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.99911 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.58956 * 113.81995 * 6 5 3 24 24 H 1.09002 * 109.70419 * 353.45846 * 6 5 3 25 25 H 1.08997 * 109.50135 * 185.41274 * 7 6 5 26 26 H 1.08998 * 109.52155 * 65.32777 * 7 6 5 27 27 H 1.09003 * 109.46113 * 301.34476 * 8 7 6 28 28 H 1.09006 * 109.45036 * 181.37769 * 8 7 6 29 29 H 0.97006 * 120.00083 * 180.02562 * 14 13 11 30 30 H 1.09001 * 109.58521 * 6.60404 * 19 5 3 31 31 H 1.09005 * 109.58651 * 246.18277 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4613 2.3249 -0.0971 5 7 3.4089 1.2765 0.1077 6 6 4.1619 0.0149 0.1119 7 6 5.0572 -0.0209 1.3545 8 6 5.9329 1.2339 1.3835 9 6 5.0438 2.4769 1.4645 10 1 4.4231 2.4227 2.3589 11 6 5.9076 3.7102 1.5256 12 1 6.9056 3.6914 1.1135 13 6 5.4257 4.8609 2.1127 14 7 6.1413 5.9639 2.0823 15 14 3.7566 4.8532 2.9515 16 1 3.9341 4.6055 4.4048 17 1 3.0956 6.1677 2.7504 18 1 2.9133 3.7804 2.3657 19 6 4.1483 2.5409 0.2232 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8699 -0.9353 0.0004 23 1 4.7787 -0.0455 -0.7848 24 1 3.4693 -0.8264 0.1363 25 1 5.6917 -0.9065 1.3204 26 1 4.4365 -0.0521 2.2499 27 1 6.5357 1.2771 0.4764 28 1 6.5883 1.1991 2.2538 29 1 5.8025 6.7735 2.4956 30 1 3.4449 3.3677 0.3222 31 1 4.7639 2.6865 -0.6645 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701318707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:53 Heat of formation + Delta-G solvation = -20.304698 kcal Electronic energy + Delta-G solvation = -14079.910881 eV Core-core repulsion = 11747.621772 eV Total energy + Delta-G solvation = -2332.289108 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.64695 -36.97092 -33.48203 -32.65462 -31.82602 -30.42857 -25.49019 -25.14330 -22.15124 -21.89121 -19.30176 -18.20944 -17.36534 -16.71632 -15.37378 -14.73873 -14.33196 -13.88250 -13.83686 -13.25419 -13.09461 -12.61585 -12.48176 -12.24423 -11.75513 -11.15847 -11.02942 -10.60760 -10.54893 -10.09090 -9.72741 -9.67394 -9.60400 -9.27007 -9.06523 -8.56119 -8.00166 -6.10673 -4.11497 1.57322 3.32088 3.43144 3.51050 3.54268 3.67628 4.44396 4.80906 4.94431 5.22213 5.29035 5.37592 5.55091 5.61982 5.85201 6.01398 6.15627 6.24111 6.31912 6.38398 6.46626 6.63611 6.70124 6.82449 6.97261 7.26157 7.39565 7.74035 7.95555 8.47881 8.64500 8.94422 9.52816 11.01636 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032674 B = 0.011944 C = 0.009616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.737256 B = 2343.713447 C = 2911.059426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.208 4.208 3 C 0.532 3.468 4 O -0.552 6.552 5 N -0.604 5.604 6 C 0.108 3.892 7 C -0.138 4.138 8 C -0.104 4.104 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.515 4.515 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.895 5.895 15 Si 0.868 3.132 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.254 1.254 19 C 0.112 3.888 20 H 0.110 0.890 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.265 0.735 30 H 0.081 0.919 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.461 -14.459 -2.856 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.228 4.228 3 C 0.322 3.678 4 O -0.432 6.432 5 N -0.335 5.335 6 C -0.016 4.016 7 C -0.176 4.176 8 C -0.141 4.141 9 C -0.014 4.014 10 H 0.051 0.949 11 C -0.553 4.553 12 H 0.093 0.907 13 C -0.127 4.127 14 N -0.532 5.532 15 Si 0.695 3.305 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.178 1.178 19 C -0.009 4.009 20 H 0.129 0.871 21 H 0.130 0.870 22 H 0.144 0.856 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.733 -13.687 -2.861 15.519 hybrid contribution -0.737 0.053 0.513 0.899 sum -7.469 -13.633 -2.348 15.722 Atomic orbital electron populations 1.24656 0.95441 1.02863 0.91786 1.23010 0.96366 0.97644 1.05821 1.18680 0.82378 0.89561 0.77213 1.90756 1.67975 1.33577 1.50918 1.48410 1.05606 1.08791 1.70725 1.21757 0.95005 0.85954 0.98850 1.22013 0.98593 0.99479 0.97534 1.21527 0.97684 0.93467 1.01456 1.19480 0.93955 0.94692 0.93293 0.94890 1.20912 1.01491 0.93917 1.38996 0.90653 1.25055 0.96952 0.95297 0.95431 1.69911 1.38322 1.00784 1.44227 0.86975 0.85143 0.78313 0.80083 1.20514 1.21271 1.17810 1.22502 0.94474 0.83563 1.00392 0.87143 0.87000 0.85567 0.91612 0.90494 0.91721 0.92096 0.92698 0.92189 0.92561 0.90059 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 14.31 28.92 0.41 -0.86 16 2 C -0.21 -2.84 9.35 -37.81 -0.35 -3.19 16 3 C 0.53 10.18 7.63 -12.67 -0.10 10.08 16 4 O -0.55 -12.85 15.67 5.27 0.08 -12.76 16 5 N -0.60 -11.37 2.97 -174.16 -0.52 -11.89 16 6 C 0.11 1.52 6.34 -3.71 -0.02 1.50 16 7 C -0.14 -2.04 6.08 -26.61 -0.16 -2.20 16 8 C -0.10 -1.96 5.15 -26.69 -0.14 -2.09 16 9 C 0.01 0.13 1.78 -91.65 -0.16 -0.04 16 10 H 0.03 0.81 5.69 -51.93 -0.30 0.51 16 11 C -0.52 -14.27 8.87 -34.44 -0.31 -14.57 16 12 H 0.08 2.23 8.05 -52.49 -0.42 1.81 16 13 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 14 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 15 Si 0.87 22.43 26.45 -169.99 -4.50 17.93 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.25 -6.62 5.81 56.52 0.33 -6.29 16 19 C 0.11 2.51 5.41 -3.71 -0.02 2.49 16 20 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 21 H 0.11 1.49 7.50 -52.49 -0.39 1.09 16 22 H 0.13 1.31 5.87 -52.49 -0.31 1.01 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 0.85 5.31 -51.93 -0.28 0.57 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.08 2.07 5.59 -51.93 -0.29 1.78 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 252.70 15.07 3.81 3.81 Total: -1.00 -32.87 252.70 -5.45 -38.32 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.15 Total: -1.93 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.94 Total: -6.80 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.26 Total: -38.57 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.50 Total: 17.93 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.87 -5.45 -38.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.013 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds