Wall clock time and date at job start Sun Mar 29 2020 21:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32997 * 1 3 3 C 1.47097 * 119.99737 * 2 1 4 4 O 1.21612 * 120.00442 * 354.70750 * 3 2 1 5 5 N 1.34777 * 120.00024 * 174.70489 * 3 2 1 6 6 C 1.46925 * 120.63039 * 5.18553 * 5 3 2 7 7 C 1.53196 * 108.77618 * 233.60933 * 6 5 3 8 8 C 1.53037 * 109.30866 * 305.36200 * 7 6 5 9 9 C 1.53043 * 109.54307 * 61.36760 * 8 7 6 10 10 H 1.09004 * 109.49759 * 58.61030 * 9 8 7 11 11 C 1.50697 * 109.50057 * 178.68380 * 9 8 7 12 12 H 1.07994 * 120.00094 * 25.27888 * 11 9 8 13 13 C 1.37874 * 119.99483 * 205.55080 * 11 9 8 14 14 N 1.31517 * 119.99631 * 184.82736 * 13 11 9 15 15 Si 1.86799 * 120.00569 * 4.83210 * 13 11 9 16 16 H 1.48493 * 109.47429 * 94.85084 * 15 13 11 17 17 H 1.48496 * 109.47191 * 214.85556 * 15 13 11 18 18 H 1.48503 * 109.46650 * 334.85097 * 15 13 11 19 19 C 1.46928 * 120.63377 * 185.18252 * 5 3 2 20 20 H 1.08000 * 120.00111 * 179.97438 * 1 2 3 21 21 H 1.07995 * 119.99940 * 0.02562 * 1 2 3 22 22 H 1.07995 * 119.99911 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.58956 * 113.81995 * 6 5 3 24 24 H 1.09002 * 109.70419 * 353.45846 * 6 5 3 25 25 H 1.08997 * 109.50135 * 185.41274 * 7 6 5 26 26 H 1.08998 * 109.52155 * 65.32777 * 7 6 5 27 27 H 1.09003 * 109.46113 * 301.34476 * 8 7 6 28 28 H 1.09006 * 109.45036 * 181.37769 * 8 7 6 29 29 H 0.97006 * 120.00083 * 180.02562 * 14 13 11 30 30 H 1.09001 * 109.58521 * 6.60404 * 19 5 3 31 31 H 1.09005 * 109.58651 * 246.18277 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0654 1.2739 0.0000 4 8 1.4613 2.3249 -0.0971 5 7 3.4089 1.2765 0.1077 6 6 4.1619 0.0149 0.1119 7 6 5.0572 -0.0209 1.3545 8 6 5.9329 1.2339 1.3835 9 6 5.0438 2.4769 1.4645 10 1 4.4231 2.4227 2.3589 11 6 5.9076 3.7102 1.5256 12 1 6.9056 3.6914 1.1135 13 6 5.4257 4.8609 2.1127 14 7 6.1413 5.9639 2.0823 15 14 3.7566 4.8532 2.9515 16 1 3.9341 4.6055 4.4048 17 1 3.0956 6.1677 2.7504 18 1 2.9133 3.7804 2.3657 19 6 4.1483 2.5409 0.2232 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5400 0.9353 -0.0004 22 1 1.8699 -0.9353 0.0004 23 1 4.7787 -0.0455 -0.7848 24 1 3.4693 -0.8264 0.1363 25 1 5.6917 -0.9065 1.3204 26 1 4.4365 -0.0521 2.2499 27 1 6.5357 1.2771 0.4764 28 1 6.5883 1.1991 2.2538 29 1 5.8025 6.7735 2.4956 30 1 3.4449 3.3677 0.3222 31 1 4.7639 2.6865 -0.6645 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701318707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:53 Heat of formation + Delta-G solvation = -43.473222 kcal Electronic energy + Delta-G solvation = -14080.915543 eV Core-core repulsion = 11747.621772 eV Total energy + Delta-G solvation = -2333.293771 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.10418 -38.51149 -35.31703 -33.99334 -33.38033 -32.07541 -27.33467 -26.62103 -23.56568 -23.33220 -20.91818 -19.58689 -18.97508 -18.48804 -16.81822 -16.51057 -16.00919 -15.44554 -15.21371 -14.86518 -14.42789 -14.36422 -14.01415 -13.75806 -13.06996 -12.95750 -12.60694 -12.54603 -12.03907 -11.74648 -11.61803 -11.33092 -11.09394 -10.76689 -10.74713 -10.67500 -9.52765 -8.38228 -6.40292 0.50406 1.21753 1.29676 1.41638 2.13522 2.26224 2.36866 3.00666 3.67801 3.94980 4.14882 4.16480 4.32115 4.49884 4.58958 4.68710 4.78410 4.80836 4.95247 4.99905 5.12992 5.23489 5.34490 5.41236 5.51624 5.59722 5.61235 5.75553 6.26666 6.57581 6.69022 7.21806 7.26503 8.78063 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032674 B = 0.011944 C = 0.009616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.737256 B = 2343.713447 C = 2911.059426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.224 4.224 3 C 0.518 3.482 4 O -0.611 6.611 5 N -0.608 5.608 6 C 0.101 3.899 7 C -0.129 4.129 8 C -0.103 4.103 9 C 0.005 3.995 10 H 0.021 0.979 11 C -0.512 4.512 12 H 0.045 0.955 13 C 0.023 3.977 14 N -0.940 5.940 15 Si 0.928 3.072 16 H -0.264 1.264 17 H -0.290 1.290 18 H -0.261 1.261 19 C 0.121 3.879 20 H 0.161 0.839 21 H 0.087 0.913 22 H 0.170 0.830 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.266 0.734 30 H 0.042 0.958 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 -18.300 -2.810 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.244 4.244 3 C 0.310 3.690 4 O -0.495 6.495 5 N -0.339 5.339 6 C -0.020 4.020 7 C -0.167 4.167 8 C -0.140 4.140 9 C -0.014 4.014 10 H 0.039 0.961 11 C -0.551 4.551 12 H 0.063 0.937 13 C -0.175 4.175 14 N -0.580 5.580 15 Si 0.754 3.246 16 H -0.189 1.189 17 H -0.216 1.216 18 H -0.186 1.186 19 C -0.002 4.002 20 H 0.179 0.821 21 H 0.105 0.895 22 H 0.187 0.813 23 H 0.099 0.901 24 H 0.140 0.860 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.019 -17.584 -2.808 19.529 hybrid contribution -0.323 1.228 0.431 1.341 sum -8.341 -16.356 -2.378 18.513 Atomic orbital electron populations 1.25017 0.94948 1.04100 0.88030 1.23008 0.96745 0.95984 1.08615 1.19755 0.82342 0.91099 0.75767 1.90723 1.69033 1.36191 1.53576 1.48453 1.06026 1.08903 1.70482 1.22166 0.95749 0.84879 0.99189 1.21971 0.98420 0.98456 0.97836 1.21458 0.97603 0.93609 1.01368 1.19431 0.93965 0.94941 0.93098 0.96053 1.21259 1.00799 0.95694 1.37307 0.93693 1.25759 1.00011 0.95184 0.96564 1.70025 1.40214 1.01556 1.46224 0.86023 0.81226 0.77620 0.79731 1.18886 1.21650 1.18577 1.21923 0.93670 0.84964 0.99627 0.82119 0.89456 0.81326 0.90055 0.86018 0.87406 0.92262 0.92577 0.92653 0.92458 0.93971 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 14.31 66.65 0.95 -0.65 16 2 C -0.22 -5.18 9.35 23.43 0.22 -4.96 16 3 C 0.52 19.11 7.63 86.57 0.66 19.77 16 4 O -0.61 -28.96 15.67 -4.07 -0.06 -29.02 16 5 N -0.61 -21.92 2.97 -823.16 -2.45 -24.36 16 6 C 0.10 2.42 6.34 86.36 0.55 2.96 16 7 C -0.13 -3.26 6.08 30.67 0.19 -3.08 16 8 C -0.10 -3.72 5.15 30.62 0.16 -3.56 16 9 C 0.01 0.25 1.78 -11.46 -0.02 0.23 16 10 H 0.02 1.05 5.69 -2.39 -0.01 1.03 16 11 C -0.51 -29.34 8.87 25.60 0.23 -29.11 16 12 H 0.04 2.78 8.05 -2.91 -0.02 2.76 16 13 C 0.02 1.39 5.47 84.65 0.46 1.85 16 14 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 15 Si 0.93 48.07 26.45 68.60 1.81 49.88 16 16 H -0.26 -12.87 7.11 99.48 0.71 -12.17 16 17 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 18 H -0.26 -13.74 5.81 99.48 0.58 -13.17 16 19 C 0.12 5.53 5.41 86.36 0.47 6.00 16 20 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 21 H 0.09 2.16 7.50 -2.91 -0.02 2.14 16 22 H 0.17 2.38 5.87 -2.91 -0.02 2.36 16 23 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 24 H 0.12 1.87 5.31 -2.39 -0.01 1.86 16 25 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 30 H 0.04 2.23 5.59 -2.39 -0.01 2.22 16 31 H 0.06 2.56 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -76.94 252.70 4.44 -72.50 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 0.98 Total: 1.05 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.86 Total: -10.55 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.15 Total: -83.86 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.06 Total: -29.02 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.81 Total: 49.88 kcal Total: -76.94 4.44 -72.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.026 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds