Wall clock time and date at job start Sun Mar 29 2020 21:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30492 * 125.65142 * 2 1 4 4 C 1.34127 * 109.25746 * 179.97438 * 3 2 1 5 5 C 1.34666 * 108.01828 * 359.72964 * 4 3 2 6 6 C 1.50704 * 126.59102 * 180.28265 * 5 4 3 7 7 N 1.46901 * 109.46947 * 95.16704 * 6 5 4 8 8 C 1.46899 * 110.99946 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47194 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00029 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00359 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00474 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99677 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47412 * 89.99626 * 13 11 9 15 15 H 1.48501 * 109.47118 * 209.99732 * 13 11 9 16 16 H 1.48496 * 109.47121 * 329.99621 * 13 11 9 17 17 N 1.35043 * 125.64745 * 179.97438 * 2 1 3 18 18 C 1.46506 * 126.39698 * 0.03592 * 17 2 1 19 19 H 1.09001 * 109.46833 * 270.04458 * 1 2 3 20 20 H 1.09000 * 109.46763 * 30.04251 * 1 2 3 21 21 H 1.09000 * 109.47006 * 150.04437 * 1 2 3 22 22 H 1.07998 * 125.99046 * 179.97438 * 4 3 2 23 23 H 1.08997 * 109.46898 * 215.16338 * 6 5 4 24 24 H 1.08996 * 109.47098 * 335.16690 * 6 5 4 25 25 H 1.00901 * 111.00258 * 56.04165 * 7 6 5 26 26 H 1.09003 * 109.46921 * 299.99354 * 8 7 6 27 27 H 1.09000 * 109.47278 * 59.99988 * 8 7 6 28 28 H 0.96998 * 120.00376 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.47060 * 90.02847 * 18 17 2 30 30 H 1.09004 * 109.47073 * 210.02335 * 18 17 2 31 31 H 1.09000 * 109.47212 * 330.02418 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5926 -0.6643 0.0070 6 6 4.8276 -1.5280 0.0159 7 7 5.1519 -1.9044 1.3983 8 6 6.3534 -2.7481 1.4461 9 6 6.6546 -3.1128 2.8770 10 1 6.0173 -2.7534 3.6715 11 6 7.7435 -3.9054 3.1719 12 7 8.0066 -4.2232 4.4206 13 14 8.8461 -4.5265 1.7979 14 1 9.9368 -3.5477 1.5576 15 1 9.4317 -5.8348 2.1862 16 1 8.0464 -4.6908 0.5575 17 7 2.2941 -1.0974 0.0005 18 6 1.8425 -2.4911 0.0004 19 1 -0.3633 0.0008 1.0277 20 1 -0.3633 0.8896 -0.5145 21 1 -0.3633 -0.8904 -0.5131 22 1 4.4099 1.3410 0.0003 23 1 4.6462 -2.4274 -0.5725 24 1 5.6615 -0.9739 -0.4150 25 1 4.3698 -2.3629 1.8412 26 1 6.1830 -3.6561 0.8676 27 1 7.1978 -2.2022 1.0253 28 1 8.7725 -4.7811 4.6281 29 1 1.7315 -2.8370 -1.0273 30 1 2.5767 -3.1110 0.5150 31 1 0.8834 -2.5623 0.5133 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701604803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:36 Heat of formation + Delta-G solvation = 57.491138 kcal Electronic energy + Delta-G solvation = -13358.604969 eV Core-core repulsion = 11061.982092 eV Total energy + Delta-G solvation = -2296.622877 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.95084 -35.71927 -33.87463 -32.68518 -31.56203 -28.84936 -27.04793 -26.21473 -23.67311 -21.19693 -20.65469 -19.45269 -16.99190 -16.39481 -15.84850 -15.17080 -14.50500 -13.94613 -13.78214 -13.40648 -13.38079 -12.84136 -12.70437 -12.48553 -12.37638 -12.27326 -11.80343 -11.52476 -10.72772 -10.64200 -9.98533 -9.73406 -9.41272 -9.35616 -8.64246 -8.04156 -7.56299 -6.10640 -4.09572 2.16281 2.87795 3.25061 3.32009 3.33104 3.33630 4.36941 4.55439 4.68431 4.83386 5.03842 5.13820 5.20307 5.24729 5.35741 5.42618 5.45495 5.61080 5.77000 5.94379 6.12249 6.55744 6.67649 6.90897 6.97837 7.33875 7.51148 7.78615 8.17769 8.28049 8.57841 8.97117 9.50317 11.02571 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057530 B = 0.006283 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.587887 B = 4455.286373 C = 4512.065737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.192 3.808 3 N -0.494 5.494 4 C -0.014 4.014 5 C -0.009 4.009 6 C 0.131 3.869 7 N -0.673 5.673 8 C 0.164 3.836 9 C -0.519 4.519 10 H 0.079 0.921 11 C 0.070 3.930 12 N -0.899 5.899 13 Si 0.878 3.122 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.268 1.268 17 N -0.456 5.456 18 C 0.070 3.930 19 H 0.077 0.923 20 H 0.087 0.913 21 H 0.069 0.931 22 H 0.169 0.831 23 H 0.025 0.975 24 H 0.090 0.910 25 H 0.333 0.667 26 H -0.016 1.016 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.817 2.960 -11.205 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.070 4.070 3 N -0.213 5.213 4 C -0.162 4.162 5 C -0.123 4.123 6 C 0.000 4.000 7 N -0.304 5.304 8 C 0.037 3.963 9 C -0.557 4.557 10 H 0.097 0.903 11 C -0.132 4.132 12 N -0.537 5.537 13 Si 0.706 3.294 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.193 1.193 17 N -0.141 5.141 18 C -0.073 4.073 19 H 0.096 0.904 20 H 0.105 0.895 21 H 0.088 0.912 22 H 0.186 0.814 23 H 0.043 0.957 24 H 0.109 0.891 25 H 0.150 0.850 26 H 0.002 0.998 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.650 4.085 -10.962 17.230 hybrid contribution 0.732 -2.145 -0.890 2.435 sum -11.917 1.940 -11.852 16.919 Atomic orbital electron populations 1.20115 0.85320 1.03507 1.03244 1.23136 0.95395 0.81531 1.06926 1.70183 1.02378 1.28336 1.20406 1.22009 0.94390 0.92114 1.07694 1.21328 0.84846 0.95867 1.10280 1.20328 0.91682 0.95575 0.92393 1.60532 1.07980 1.48952 1.12906 1.20039 0.88372 0.89737 0.98190 1.21030 1.12563 1.30749 0.91332 0.90306 1.24902 0.97220 0.95719 0.95401 1.69893 1.28711 1.37510 1.17627 0.86815 0.81302 0.78579 0.82746 1.19996 1.21167 1.19333 1.45114 1.06343 1.07359 1.55252 1.22016 1.02062 0.79932 1.03259 0.90405 0.89459 0.91235 0.81352 0.95710 0.89143 0.85032 0.99816 0.95625 0.92557 0.90776 0.89478 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 9.98 36.01 0.36 -0.23 16 2 C 0.19 2.74 7.90 -155.42 -1.23 1.51 16 3 N -0.49 -8.41 11.25 -10.81 -0.12 -8.53 16 4 C -0.01 -0.23 11.79 -17.81 -0.21 -0.44 16 5 C -0.01 -0.15 6.46 -81.60 -0.53 -0.67 16 6 C 0.13 2.21 5.74 -4.97 -0.03 2.18 16 7 N -0.67 -13.93 6.48 -116.34 -0.75 -14.69 16 8 C 0.16 3.92 4.51 -4.98 -0.02 3.90 16 9 C -0.52 -14.78 9.87 -34.44 -0.34 -15.12 16 10 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 13 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 17 N -0.46 -6.43 3.15 -116.67 -0.37 -6.79 16 18 C 0.07 0.71 10.56 59.85 0.63 1.34 16 19 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.07 0.48 7.70 -51.93 -0.40 0.08 16 22 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 23 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 24 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.33 6.74 8.54 -39.29 -0.34 6.40 16 26 H -0.02 -0.37 7.20 -51.93 -0.37 -0.75 16 27 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.95 7.70 -51.93 -0.40 0.55 16 31 H 0.09 0.67 7.65 -51.93 -0.40 0.27 16 LS Contribution 266.77 15.07 4.02 4.02 Total: -1.00 -33.20 266.77 -7.00 -40.20 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.42 Total: 1.55 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -1.46 Total: -5.63 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.47 Total: -56.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.20 -7.00 -40.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701604803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.691 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds