Wall clock time and date at job start Sun Mar 29 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.30492 * 125.65142 * 2 1 4 4 C 1.34127 * 109.25746 * 179.97438 * 3 2 1 5 5 C 1.34666 * 108.01828 * 359.72964 * 4 3 2 6 6 C 1.50704 * 126.59102 * 180.28265 * 5 4 3 7 7 N 1.46901 * 109.46947 * 95.16704 * 6 5 4 8 8 C 1.46899 * 110.99946 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47194 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00029 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00359 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00474 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99677 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47412 * 89.99626 * 13 11 9 15 15 H 1.48501 * 109.47118 * 209.99732 * 13 11 9 16 16 H 1.48496 * 109.47121 * 329.99621 * 13 11 9 17 17 N 1.35043 * 125.64745 * 179.97438 * 2 1 3 18 18 C 1.46506 * 126.39698 * 0.03592 * 17 2 1 19 19 H 1.09001 * 109.46833 * 270.04458 * 1 2 3 20 20 H 1.09000 * 109.46763 * 30.04251 * 1 2 3 21 21 H 1.09000 * 109.47006 * 150.04437 * 1 2 3 22 22 H 1.07998 * 125.99046 * 179.97438 * 4 3 2 23 23 H 1.08997 * 109.46898 * 215.16338 * 6 5 4 24 24 H 1.08996 * 109.47098 * 335.16690 * 6 5 4 25 25 H 1.00901 * 111.00258 * 56.04165 * 7 6 5 26 26 H 1.09003 * 109.46921 * 299.99354 * 8 7 6 27 27 H 1.09000 * 109.47278 * 59.99988 * 8 7 6 28 28 H 0.96998 * 120.00376 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.47060 * 90.02847 * 18 17 2 30 30 H 1.09004 * 109.47073 * 210.02335 * 18 17 2 31 31 H 1.09000 * 109.47212 * 330.02418 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5926 -0.6643 0.0070 6 6 4.8276 -1.5280 0.0159 7 7 5.1519 -1.9044 1.3983 8 6 6.3534 -2.7481 1.4461 9 6 6.6546 -3.1128 2.8770 10 1 6.0173 -2.7534 3.6715 11 6 7.7435 -3.9054 3.1719 12 7 8.0066 -4.2232 4.4206 13 14 8.8461 -4.5265 1.7979 14 1 9.9368 -3.5477 1.5576 15 1 9.4317 -5.8348 2.1862 16 1 8.0464 -4.6908 0.5575 17 7 2.2941 -1.0974 0.0005 18 6 1.8425 -2.4911 0.0004 19 1 -0.3633 0.0008 1.0277 20 1 -0.3633 0.8896 -0.5145 21 1 -0.3633 -0.8904 -0.5131 22 1 4.4099 1.3410 0.0003 23 1 4.6462 -2.4274 -0.5725 24 1 5.6615 -0.9739 -0.4150 25 1 4.3698 -2.3629 1.8412 26 1 6.1830 -3.6561 0.8676 27 1 7.1978 -2.2022 1.0253 28 1 8.7725 -4.7811 4.6281 29 1 1.7315 -2.8370 -1.0273 30 1 2.5767 -3.1110 0.5150 31 1 0.8834 -2.5623 0.5133 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701604803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:35 Heat of formation + Delta-G solvation = 33.407599 kcal Electronic energy + Delta-G solvation = -13359.649309 eV Core-core repulsion = 11061.982092 eV Total energy + Delta-G solvation = -2297.667217 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.07490 -37.34917 -34.98495 -34.63009 -32.81691 -30.32779 -28.23586 -27.49048 -25.11208 -23.11028 -21.81249 -20.54957 -19.01689 -17.59372 -16.93555 -16.83609 -16.11024 -15.42536 -15.30135 -14.60421 -14.51930 -14.15296 -14.02894 -13.68478 -13.39270 -13.26231 -13.11714 -12.98959 -12.53347 -12.46244 -11.87532 -11.56206 -10.95550 -10.82123 -10.50324 -9.34276 -9.08489 -8.31411 -6.37251 1.01617 1.36228 1.37875 1.48353 1.88190 2.13484 2.33475 3.02826 3.52408 3.63189 3.81944 3.90137 4.07027 4.34294 4.37360 4.55526 4.63538 4.64161 4.75050 4.75939 4.99073 5.02819 5.08847 5.40568 5.49086 5.77421 5.88792 6.32060 6.46648 6.56608 6.71162 7.13007 7.27845 8.85490 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057530 B = 0.006283 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.587887 B = 4455.286373 C = 4512.065737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.196 3.804 3 N -0.532 5.532 4 C -0.034 4.034 5 C -0.025 4.025 6 C 0.139 3.861 7 N -0.685 5.685 8 C 0.176 3.824 9 C -0.532 4.532 10 H 0.032 0.968 11 C 0.008 3.992 12 N -0.948 5.948 13 Si 0.955 3.045 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.246 1.246 17 N -0.457 5.457 18 C 0.062 3.938 19 H 0.089 0.911 20 H 0.093 0.907 21 H 0.099 0.901 22 H 0.171 0.829 23 H 0.042 0.958 24 H 0.095 0.905 25 H 0.332 0.668 26 H -0.005 1.005 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 2.156 -13.379 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.066 4.066 3 N -0.253 5.253 4 C -0.182 4.182 5 C -0.140 4.140 6 C 0.009 3.991 7 N -0.316 5.316 8 C 0.048 3.952 9 C -0.570 4.570 10 H 0.051 0.949 11 C -0.189 4.189 12 N -0.589 5.589 13 Si 0.777 3.223 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.169 1.169 17 N -0.141 5.141 18 C -0.079 4.079 19 H 0.108 0.892 20 H 0.111 0.889 21 H 0.118 0.882 22 H 0.188 0.812 23 H 0.060 0.940 24 H 0.113 0.887 25 H 0.149 0.851 26 H 0.012 0.988 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.528 3.279 -13.152 19.151 hybrid contribution 0.867 -1.843 -0.140 2.041 sum -12.661 1.436 -13.292 18.413 Atomic orbital electron populations 1.20342 0.81856 1.05336 1.04539 1.24060 0.97214 0.80963 1.04381 1.70176 1.02649 1.30042 1.22392 1.22230 0.94908 0.92817 1.08239 1.21178 0.85728 0.95533 1.11541 1.20263 0.92353 0.96297 0.90181 1.60407 1.07207 1.48207 1.15783 1.19783 0.89861 0.90567 0.95035 1.21311 1.12120 1.30765 0.92822 0.94917 1.25912 0.98941 0.95810 0.98274 1.70055 1.29763 1.38662 1.20373 0.85610 0.79059 0.77968 0.79625 1.19106 1.20683 1.16927 1.45346 1.05492 1.08874 1.54360 1.22325 1.02929 0.77589 1.05037 0.89216 0.88856 0.88223 0.81222 0.93988 0.88675 0.85053 0.98772 0.95219 0.92275 0.88502 0.90544 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 9.98 71.24 0.71 -0.26 16 2 C 0.20 5.24 7.90 138.13 1.09 6.33 16 3 N -0.53 -17.83 11.25 -188.13 -2.12 -19.94 16 4 C -0.03 -1.14 11.79 83.52 0.98 -0.16 16 5 C -0.02 -0.78 6.46 40.95 0.26 -0.52 16 6 C 0.14 4.48 5.74 85.56 0.49 4.98 16 7 N -0.69 -28.01 6.48 -521.98 -3.38 -31.39 16 8 C 0.18 8.21 4.51 85.56 0.39 8.59 16 9 C -0.53 -30.82 9.87 25.60 0.25 -30.57 16 10 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 11 C 0.01 0.48 5.47 84.66 0.46 0.94 16 12 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 13 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.25 -10.14 6.54 99.48 0.65 -9.49 16 17 N -0.46 -11.97 3.15 -523.02 -1.65 -13.62 16 18 C 0.06 1.08 10.56 127.77 1.35 2.43 16 19 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.10 0.96 7.70 -2.39 -0.02 0.94 16 22 H 0.17 5.33 8.06 -2.91 -0.02 5.31 16 23 H 0.04 1.22 8.07 -2.39 -0.02 1.20 16 24 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.33 13.46 8.54 -89.69 -0.77 12.69 16 26 H -0.01 -0.24 7.20 -2.39 -0.02 -0.26 16 27 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.51 7.70 -2.38 -0.02 1.49 16 31 H 0.11 1.33 7.65 -2.39 -0.02 1.31 16 Total: -1.00 -72.90 266.77 1.33 -71.57 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.29 Total: 15.53 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.99 Total: -8.23 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -6.85 Total: -123.90 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -72.90 1.33 -71.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701604803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.979 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds