Wall clock time and date at job start Sun Mar 29 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.50703 * 109.47349 * 89.99630 * 3 2 1 5 5 H 1.08007 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00296 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00169 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46982 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47194 * 119.99521 * 8 6 4 11 11 H 1.48495 * 109.47123 * 239.99959 * 8 6 4 12 12 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00031 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99563 * 0.02562 * 12 2 1 15 15 H 1.08997 * 115.55405 * 325.66623 * 14 12 2 16 16 C 1.53003 * 117.49818 * 111.37738 * 14 12 2 17 17 C 1.52993 * 59.99959 * 107.48627 * 16 14 12 18 18 C 1.52992 * 138.58986 * 130.88932 * 17 16 14 19 19 C 1.52999 * 138.58898 * 229.10875 * 17 16 14 20 20 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 21 21 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 22 22 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 23 23 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 24 24 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 25 25 H 0.96993 * 120.00222 * 180.02562 * 7 6 4 26 26 H 1.09007 * 117.49572 * 214.97063 * 16 14 12 27 27 H 1.08994 * 117.50338 * 359.97438 * 16 14 12 28 28 H 1.08997 * 117.50238 * 238.38508 * 18 17 16 29 29 H 1.09004 * 117.50126 * 23.40435 * 18 17 16 30 30 H 1.09000 * 117.49483 * 336.58937 * 19 17 16 31 31 H 1.08993 * 117.49598 * 121.59519 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0980 1.0958 2.2418 6 6 3.1260 2.8780 1.6728 7 7 3.5534 3.6181 0.6732 8 14 3.4379 3.4169 3.4340 9 1 2.8618 2.4158 4.3673 10 1 4.9005 3.5257 3.6667 11 1 2.7999 4.7373 3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.4469 -2.4733 0.5548 16 6 1.4611 -3.3317 -1.2631 17 6 2.2075 -3.7626 0.0010 18 6 2.3763 -5.0152 0.8631 19 6 3.6072 -4.2312 0.4035 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 -0.8900 -0.5138 22 1 -0.3633 0.8900 -0.5139 23 1 3.1499 1.1384 -0.5137 24 1 1.6085 2.0284 -0.5138 25 1 4.0302 4.4439 0.8504 26 1 0.5720 -3.8983 -1.5403 27 1 2.0555 -2.9530 -2.0945 28 1 2.0978 -4.9439 1.9145 29 1 2.1889 -5.9799 0.3914 30 1 4.2296 -4.6801 -0.3706 31 1 4.1385 -3.6439 1.1523 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705149204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:57 Heat of formation + Delta-G solvation = 24.311814 kcal Electronic energy + Delta-G solvation = -13612.922746 eV Core-core repulsion = 11282.568355 eV Total energy + Delta-G solvation = -2330.354391 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.37321 -37.12906 -34.67186 -32.73557 -32.16962 -27.92449 -25.82636 -24.10820 -22.23653 -21.88256 -19.52562 -17.89770 -16.56322 -16.30824 -15.35310 -14.87250 -14.66632 -14.39347 -13.85351 -13.23269 -12.42246 -12.11974 -12.01575 -11.79839 -11.44037 -11.30413 -11.21626 -10.84708 -10.58459 -10.13639 -10.00766 -9.85344 -9.76787 -9.57738 -8.79452 -8.41788 -7.58482 -6.02281 -4.06747 3.18679 3.30929 3.38336 3.43046 3.68438 4.03294 4.18348 4.45425 4.55726 4.99727 5.02464 5.30842 5.44033 5.60391 5.67928 5.71378 5.78665 5.80294 5.82194 6.02138 6.10190 6.13416 6.24384 6.36310 7.09854 7.46695 7.59508 7.94709 8.26247 8.47605 8.93532 9.16874 9.58410 11.05869 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.040540 B = 0.008038 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.502983 B = 3482.432878 C = 3770.766485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.601 5.601 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.531 3.469 13 O -0.536 6.536 14 C -0.135 4.135 15 H 0.118 0.882 16 C -0.105 4.105 17 C -0.203 4.203 18 C -0.134 4.134 19 C -0.113 4.113 20 H 0.047 0.953 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 -12.884 -1.996 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.333 5.333 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.317 3.683 13 O -0.413 6.413 14 C -0.156 4.156 15 H 0.136 0.864 16 C -0.142 4.142 17 C -0.203 4.203 18 C -0.170 4.170 19 C -0.150 4.150 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.033 -12.669 -2.040 14.179 hybrid contribution -0.009 0.552 1.048 1.185 sum -6.042 -12.117 -0.992 13.576 Atomic orbital electron populations 1.21612 0.81468 1.01624 1.01023 1.48081 1.06187 1.07614 1.71455 1.19305 0.92574 0.78041 0.97492 1.21488 1.36277 1.06169 0.92390 0.92468 1.24942 0.95394 0.96405 0.97454 1.69941 1.38555 1.14366 1.30651 0.86441 0.78077 0.78291 0.84615 1.19825 1.20861 1.20932 1.19421 0.87481 0.83946 0.77437 1.90651 1.13731 1.87037 1.49876 1.22109 1.00414 0.89884 1.03240 0.86433 1.22610 1.01019 1.00126 0.90443 1.21121 1.01363 0.96158 1.01665 1.22723 1.02203 0.93300 0.98817 1.22555 0.89236 1.00735 1.02473 0.93398 0.92429 0.91465 0.93886 0.94981 0.92787 0.88124 0.88276 0.88779 0.88732 0.88824 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.05 59.85 0.60 2.04 16 2 N -0.60 -13.37 2.86 -182.95 -0.52 -13.89 16 3 C 0.25 6.63 5.20 -5.19 -0.03 6.60 16 4 C -0.52 -15.34 9.39 -34.44 -0.32 -15.66 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.53 11.69 7.46 -10.98 -0.08 11.61 16 13 O -0.54 -14.07 15.82 5.56 0.09 -13.98 16 14 C -0.14 -2.22 4.80 -91.77 -0.44 -2.66 16 15 H 0.12 1.67 7.26 -51.93 -0.38 1.29 16 16 C -0.10 -1.42 10.23 -26.73 -0.27 -1.69 16 17 C -0.20 -3.06 5.05 -154.52 -0.78 -3.84 16 18 C -0.13 -1.62 10.53 -26.73 -0.28 -1.90 16 19 C -0.11 -1.66 10.16 -26.73 -0.27 -1.94 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.75 6.64 -51.93 -0.34 0.41 16 22 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 23 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 24 H 0.03 0.87 7.89 -51.93 -0.41 0.46 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 27 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 271.39 15.07 4.09 4.09 Total: -1.00 -33.69 271.39 -7.04 -40.73 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.43 Total: -2.03 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.98 Total: -5.80 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.21 Total: -40.30 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.69 -7.04 -40.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705149204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.039 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds