Wall clock time and date at job start Sun Mar 29 2020 21:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.50703 * 109.47349 * 89.99630 * 3 2 1 5 5 H 1.08007 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00296 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00169 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46982 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47194 * 119.99521 * 8 6 4 11 11 H 1.48495 * 109.47123 * 239.99959 * 8 6 4 12 12 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00031 * 180.02562 * 12 2 1 14 14 C 1.50699 * 119.99563 * 0.02562 * 12 2 1 15 15 H 1.08997 * 115.55405 * 325.66623 * 14 12 2 16 16 C 1.53003 * 117.49818 * 111.37738 * 14 12 2 17 17 C 1.52993 * 59.99959 * 107.48627 * 16 14 12 18 18 C 1.52992 * 138.58986 * 130.88932 * 17 16 14 19 19 C 1.52999 * 138.58898 * 229.10875 * 17 16 14 20 20 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 21 21 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 22 22 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 23 23 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 24 24 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 25 25 H 0.96993 * 120.00222 * 180.02562 * 7 6 4 26 26 H 1.09007 * 117.49572 * 214.97063 * 16 14 12 27 27 H 1.08994 * 117.50338 * 359.97438 * 16 14 12 28 28 H 1.08997 * 117.50238 * 238.38508 * 18 17 16 29 29 H 1.09004 * 117.50126 * 23.40435 * 18 17 16 30 30 H 1.09000 * 117.49483 * 336.58937 * 19 17 16 31 31 H 1.08993 * 117.49598 * 121.59519 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0980 1.0958 2.2418 6 6 3.1260 2.8780 1.6728 7 7 3.5534 3.6181 0.6732 8 14 3.4379 3.4169 3.4340 9 1 2.8618 2.4158 4.3673 10 1 4.9005 3.5257 3.6667 11 1 2.7999 4.7373 3.6679 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.4469 -2.4733 0.5548 16 6 1.4611 -3.3317 -1.2631 17 6 2.2075 -3.7626 0.0010 18 6 2.3763 -5.0152 0.8631 19 6 3.6072 -4.2312 0.4035 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 -0.8900 -0.5138 22 1 -0.3633 0.8900 -0.5139 23 1 3.1499 1.1384 -0.5137 24 1 1.6085 2.0284 -0.5138 25 1 4.0302 4.4439 0.8504 26 1 0.5720 -3.8983 -1.5403 27 1 2.0555 -2.9530 -2.0945 28 1 2.0978 -4.9439 1.9145 29 1 2.1889 -5.9799 0.3914 30 1 4.2296 -4.6801 -0.3706 31 1 4.1385 -3.6439 1.1523 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705149204.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:57 Heat of formation + Delta-G solvation = 2.439683 kcal Electronic energy + Delta-G solvation = -13613.871193 eV Core-core repulsion = 11282.568355 eV Total energy + Delta-G solvation = -2331.302838 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.92499 -38.46371 -36.52212 -34.77936 -33.47440 -29.94646 -27.38125 -25.95841 -23.54635 -23.26186 -20.82271 -19.37480 -18.74803 -17.93948 -17.10257 -16.34308 -16.13477 -15.84857 -15.39295 -14.82202 -14.32036 -13.77695 -13.48159 -13.37673 -13.18071 -12.84956 -12.61817 -12.53288 -12.34000 -12.24226 -11.72325 -11.12695 -10.97782 -10.88906 -10.67767 -10.51254 -9.43934 -8.25908 -6.41366 1.33178 1.35896 1.47775 1.65756 2.24000 2.37919 2.79811 2.91320 3.03065 3.39049 3.77780 3.88798 4.14927 4.41269 4.54270 4.62925 4.72114 4.76028 4.78348 4.83212 4.90792 4.99334 5.03527 5.07865 5.19281 5.29486 5.53451 5.82626 6.02656 6.66251 6.77605 7.24752 7.47902 8.81442 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.040540 B = 0.008038 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.502983 B = 3482.432878 C = 3770.766485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.610 5.610 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.050 0.950 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.265 1.265 12 C 0.518 3.482 13 O -0.595 6.595 14 C -0.147 4.147 15 H 0.148 0.852 16 C -0.077 4.077 17 C -0.230 4.230 18 C -0.093 4.093 19 C -0.142 4.142 20 H 0.056 0.944 21 H 0.101 0.899 22 H 0.071 0.929 23 H -0.004 1.004 24 H 0.026 0.974 25 H 0.268 0.732 26 H 0.147 0.853 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 -14.622 -1.254 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.190 1.190 12 C 0.308 3.692 13 O -0.476 6.476 14 C -0.168 4.168 15 H 0.165 0.835 16 C -0.114 4.114 17 C -0.231 4.231 18 C -0.130 4.130 19 C -0.179 4.179 20 H 0.074 0.926 21 H 0.119 0.881 22 H 0.090 0.910 23 H 0.014 0.986 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.164 0.836 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.147 0.853 30 H 0.122 0.878 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.133 -14.420 -1.304 16.606 hybrid contribution 0.661 1.094 0.768 1.492 sum -7.471 -13.325 -0.536 15.286 Atomic orbital electron populations 1.21917 0.77778 1.04051 1.02297 1.48136 1.08518 1.06177 1.71230 1.18784 0.91091 0.80374 0.96052 1.21731 1.36982 1.06595 0.93019 0.93158 1.25894 0.94786 0.96341 1.02231 1.70053 1.38901 1.14846 1.33053 0.85337 0.77964 0.78488 0.78834 1.19256 1.20613 1.19018 1.20522 0.87270 0.85694 0.75763 1.90611 1.16555 1.88080 1.52384 1.22020 1.01156 0.86962 1.06681 0.83471 1.22751 1.01874 0.98077 0.88680 1.21477 1.01566 0.96693 1.03321 1.22847 0.98032 0.93170 0.98928 1.22572 0.90148 1.02310 1.02823 0.92583 0.88098 0.91019 0.98637 0.95630 0.92286 0.83560 0.89727 0.88053 0.85345 0.87800 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.56 10.05 127.77 1.28 3.85 16 2 N -0.61 -27.51 2.86 -851.13 -2.43 -29.94 16 3 C 0.26 14.63 5.20 85.63 0.45 15.08 16 4 C -0.54 -32.78 9.39 25.60 0.24 -32.54 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 8 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 C 0.52 23.23 7.46 87.66 0.65 23.89 16 13 O -0.59 -32.97 15.82 -3.02 -0.05 -33.01 16 14 C -0.15 -4.53 4.80 -11.54 -0.06 -4.59 16 15 H 0.15 3.60 7.26 -2.39 -0.02 3.59 16 16 C -0.08 -1.84 10.23 30.59 0.31 -1.52 16 17 C -0.23 -6.46 5.05 -52.19 -0.26 -6.73 16 18 C -0.09 -1.95 10.53 30.59 0.32 -1.63 16 19 C -0.14 -4.11 10.16 30.60 0.31 -3.80 16 20 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.10 2.29 6.64 -2.39 -0.02 2.27 16 22 H 0.07 2.17 7.89 -2.38 -0.02 2.15 16 23 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 24 H 0.03 1.45 7.89 -2.39 -0.02 1.43 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.15 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -77.44 271.39 4.65 -72.80 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.10 Total: 6.52 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 3.71 Total: -7.18 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -2.15 Total: -87.28 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.05 Total: -33.01 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -77.44 4.65 -72.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705149204.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.237 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds