Wall clock time and date at job start Sun Mar 29 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 120.00137 * 2 1 4 4 C 1.50694 * 109.47115 * 270.00167 * 3 2 1 5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99792 * 179.72330 * 6 4 3 8 8 Si 1.86795 * 120.00009 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 C 1.34777 * 119.99685 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 H 1.09001 * 115.55236 * 34.33707 * 14 12 2 16 16 C 1.53000 * 117.50160 * 248.61810 * 14 12 2 17 17 C 1.52985 * 60.00216 * 252.51228 * 16 14 12 18 18 C 1.52995 * 138.58933 * 130.88932 * 17 16 14 19 19 C 1.52996 * 60.00122 * 130.89847 * 18 17 16 20 20 H 1.08998 * 109.47360 * 89.99540 * 1 2 3 21 21 H 1.08997 * 109.47247 * 210.00381 * 1 2 3 22 22 H 1.08996 * 109.46600 * 329.99810 * 1 2 3 23 23 H 1.08998 * 109.46734 * 150.00284 * 3 2 1 24 24 H 1.09002 * 109.47081 * 30.00055 * 3 2 1 25 25 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 26 26 H 1.09004 * 117.49580 * 0.02562 * 16 14 12 27 27 H 1.08999 * 117.49897 * 145.02309 * 16 14 12 28 28 H 1.09002 * 117.49776 * 238.38764 * 18 17 16 29 29 H 1.08995 * 117.49894 * 23.40317 * 18 17 16 30 30 H 1.09001 * 117.49730 * 252.52153 * 19 18 17 31 31 H 1.08995 * 117.50269 * 107.49186 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.3500 3.2549 -2.9126 8 14 3.7331 3.9292 -0.2529 9 1 5.1066 3.5080 0.1229 10 1 3.7479 5.3559 -0.6643 11 1 2.8272 3.7591 0.9115 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.4468 -2.4733 -0.5549 16 6 1.4610 -3.3318 1.2630 17 6 2.2073 -3.7627 -0.0011 18 6 3.6070 -4.2313 -0.4037 19 6 2.3761 -5.0153 -0.8633 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3632 0.8900 0.5139 23 1 3.1500 1.1382 0.5138 24 1 1.6085 2.0284 0.5139 25 1 3.8262 4.0812 -3.0898 26 1 2.0555 -2.9531 2.0944 27 1 0.5720 -3.8983 1.5403 28 1 4.1382 -3.6441 -1.1527 29 1 4.2294 -4.6802 0.3703 30 1 2.1887 -5.9798 -0.3915 31 1 2.0976 -4.9439 -1.9147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705149220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:59 Heat of formation + Delta-G solvation = 29.011479 kcal Electronic energy + Delta-G solvation = -13641.263306 eV Core-core repulsion = 11311.112708 eV Total energy + Delta-G solvation = -2330.150599 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.46558 -37.20727 -34.79387 -32.70513 -32.19458 -28.58044 -25.95097 -24.05313 -22.24953 -21.65199 -19.53336 -17.96217 -16.92495 -16.48533 -15.43264 -14.90286 -14.67213 -14.47813 -13.70073 -13.41791 -12.46770 -12.37760 -12.10113 -11.98434 -11.50597 -11.48956 -11.33192 -10.87775 -10.53377 -10.14017 -10.02500 -9.87954 -9.80242 -9.52360 -8.91460 -8.57093 -7.65380 -6.06946 -4.05368 3.11121 3.30166 3.36129 3.37832 3.61952 3.98265 4.10520 4.41062 4.49252 4.96021 4.96785 5.24115 5.38822 5.56024 5.62717 5.69766 5.73000 5.77296 5.79612 5.94129 6.07650 6.09324 6.19695 6.35452 6.72057 6.96320 7.38285 7.63292 8.29503 8.49443 8.95608 9.04729 9.53427 11.06631 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044159 B = 0.008126 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.916396 B = 3445.082407 C = 3629.467125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.597 5.597 3 C 0.216 3.784 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.534 3.466 13 O -0.535 6.535 14 C -0.135 4.135 15 H 0.120 0.880 16 C -0.105 4.105 17 C -0.202 4.202 18 C -0.113 4.113 19 C -0.133 4.133 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.036 0.964 24 H 0.030 0.970 25 H 0.264 0.736 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -12.212 7.687 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.329 5.329 3 C 0.095 3.905 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.320 3.680 13 O -0.412 6.412 14 C -0.156 4.156 15 H 0.137 0.863 16 C -0.142 4.142 17 C -0.203 4.203 18 C -0.150 4.150 19 C -0.169 4.169 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.638 -12.024 7.578 15.290 hybrid contribution 0.154 0.803 0.437 0.927 sum -5.484 -11.221 8.015 14.840 Atomic orbital electron populations 1.21639 0.80937 1.01697 1.01444 1.47763 1.06304 1.06903 1.71904 1.19672 0.92454 0.79993 0.98333 1.21347 1.36882 1.07100 0.91337 0.90827 1.24871 0.95239 0.97382 0.95611 1.69905 1.41546 1.23584 1.18658 0.86831 0.80118 0.79718 0.82915 1.19910 1.21037 1.19081 1.19439 0.87458 0.83942 0.77138 1.90651 1.13752 1.87034 1.49720 1.22070 1.00527 0.89672 1.03329 0.86258 1.22612 1.01071 1.00120 0.90383 1.21123 1.01452 0.96152 1.01562 1.22567 0.89214 1.00753 1.02482 1.22729 1.02101 0.93231 0.98883 0.92983 0.92162 0.91473 0.94622 0.95227 0.92584 0.88322 0.88052 0.88016 0.88820 0.88696 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.05 59.85 0.60 1.99 16 2 N -0.60 -12.84 2.86 -182.96 -0.52 -13.37 16 3 C 0.22 5.46 4.27 -5.20 -0.02 5.44 16 4 C -0.53 -15.63 9.94 -34.44 -0.34 -15.97 16 5 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 8 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 12 C 0.53 11.47 7.46 -10.99 -0.08 11.39 16 13 O -0.53 -13.68 15.82 5.56 0.09 -13.59 16 14 C -0.13 -2.16 4.80 -91.77 -0.44 -2.60 16 15 H 0.12 1.66 7.26 -51.93 -0.38 1.28 16 16 C -0.10 -1.37 10.23 -26.74 -0.27 -1.64 16 17 C -0.20 -3.01 5.05 -154.52 -0.78 -3.79 16 18 C -0.11 -1.65 10.16 -26.74 -0.27 -1.92 16 19 C -0.13 -1.60 10.53 -26.73 -0.28 -1.88 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.06 0.75 6.64 -51.93 -0.34 0.40 16 22 H 0.07 0.99 7.89 -51.93 -0.41 0.58 16 23 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 24 H 0.03 0.71 6.95 -51.93 -0.36 0.35 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 267.79 15.07 4.04 4.04 Total: -1.00 -34.58 267.79 -6.68 -41.26 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.40 Total: -1.21 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.99 Total: -6.98 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.25 Total: -40.81 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.58 -6.68 -41.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705149220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.272 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds