Wall clock time and date at job start Sun Mar 29 2020 21:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46497 * 120.00137 * 2 1 4 4 C 1.50694 * 109.47115 * 270.00167 * 3 2 1 5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99792 * 179.72330 * 6 4 3 8 8 Si 1.86795 * 120.00009 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 C 1.34777 * 119.99685 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99709 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99969 * 359.97438 * 12 2 1 15 15 H 1.09001 * 115.55236 * 34.33707 * 14 12 2 16 16 C 1.53000 * 117.50160 * 248.61810 * 14 12 2 17 17 C 1.52985 * 60.00216 * 252.51228 * 16 14 12 18 18 C 1.52995 * 138.58933 * 130.88932 * 17 16 14 19 19 C 1.52996 * 60.00122 * 130.89847 * 18 17 16 20 20 H 1.08998 * 109.47360 * 89.99540 * 1 2 3 21 21 H 1.08997 * 109.47247 * 210.00381 * 1 2 3 22 22 H 1.08996 * 109.46600 * 329.99810 * 1 2 3 23 23 H 1.08998 * 109.46734 * 150.00284 * 3 2 1 24 24 H 1.09002 * 109.47081 * 30.00055 * 3 2 1 25 25 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 26 26 H 1.09004 * 117.49580 * 0.02562 * 16 14 12 27 27 H 1.08999 * 117.49897 * 145.02309 * 16 14 12 28 28 H 1.09002 * 117.49776 * 238.38764 * 18 17 16 29 29 H 1.08995 * 117.49894 * 23.40317 * 18 17 16 30 30 H 1.09001 * 117.49730 * 252.52153 * 19 18 17 31 31 H 1.08995 * 117.50269 * 107.49186 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.3500 3.2549 -2.9126 8 14 3.7331 3.9292 -0.2529 9 1 5.1066 3.5080 0.1229 10 1 3.7479 5.3559 -0.6643 11 1 2.8272 3.7591 0.9115 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.4468 -2.4733 -0.5549 16 6 1.4610 -3.3318 1.2630 17 6 2.2073 -3.7627 -0.0011 18 6 3.6070 -4.2313 -0.4037 19 6 2.3761 -5.0153 -0.8633 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3632 0.8900 0.5139 23 1 3.1500 1.1382 0.5138 24 1 1.6085 2.0284 0.5139 25 1 3.8262 4.0812 -3.0898 26 1 2.0555 -2.9531 2.0944 27 1 0.5720 -3.8983 1.5403 28 1 4.1382 -3.6441 -1.1527 29 1 4.2294 -4.6802 0.3703 30 1 2.1887 -5.9798 -0.3915 31 1 2.0976 -4.9439 -1.9147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705149220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:58 Heat of formation + Delta-G solvation = 5.475944 kcal Electronic energy + Delta-G solvation = -13642.283883 eV Core-core repulsion = 11311.112708 eV Total energy + Delta-G solvation = -2331.171176 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.97249 -38.49757 -36.56736 -34.75121 -33.52111 -30.56155 -27.42508 -25.77363 -23.33683 -23.26697 -20.81643 -19.39792 -19.18193 -18.00513 -17.10412 -16.43685 -16.01079 -15.86396 -15.29452 -15.07376 -14.47816 -13.87394 -13.69256 -13.39527 -13.26797 -12.84448 -12.58848 -12.46765 -12.34848 -12.04533 -11.78592 -11.14294 -10.99303 -10.90219 -10.85766 -10.56815 -9.42158 -8.37577 -6.43223 1.29934 1.34654 1.43378 1.61168 2.22178 2.28407 2.78244 2.87920 2.96676 3.37526 3.74703 3.87800 4.13586 4.39731 4.52695 4.60766 4.67296 4.74811 4.75803 4.77535 4.82994 4.90459 4.95996 5.02004 5.08608 5.28348 5.42257 5.60980 6.20633 6.57555 6.68168 7.17586 7.41131 8.79798 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.044159 B = 0.008126 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.916396 B = 3445.082407 C = 3629.467125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.607 5.607 3 C 0.223 3.777 4 C -0.540 4.540 5 H 0.024 0.976 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.236 1.236 12 C 0.520 3.480 13 O -0.592 6.592 14 C -0.151 4.151 15 H 0.145 0.855 16 C -0.071 4.071 17 C -0.231 4.231 18 C -0.140 4.140 19 C -0.097 4.097 20 H 0.047 0.953 21 H 0.103 0.897 22 H 0.081 0.919 23 H 0.017 0.983 24 H 0.054 0.946 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.146 0.854 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 -13.315 9.993 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.337 5.337 3 C 0.101 3.899 4 C -0.579 4.579 5 H 0.042 0.958 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.774 3.226 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.159 1.159 12 C 0.310 3.690 13 O -0.473 6.473 14 C -0.171 4.171 15 H 0.162 0.838 16 C -0.108 4.108 17 C -0.232 4.232 18 C -0.177 4.177 19 C -0.133 4.133 20 H 0.065 0.935 21 H 0.122 0.878 22 H 0.100 0.900 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.108 0.892 27 H 0.164 0.836 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.148 0.852 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.503 -13.146 9.888 18.080 hybrid contribution 0.724 1.094 -0.389 1.368 sum -6.779 -12.052 9.499 16.776 Atomic orbital electron populations 1.21953 0.77497 1.04625 1.02068 1.47918 1.08565 1.05761 1.71505 1.19361 0.92766 0.82532 0.95237 1.21578 1.37046 1.06823 0.92429 0.95782 1.25918 0.95145 0.98973 0.98859 1.70060 1.42627 1.24539 1.21389 0.85658 0.79513 0.77738 0.79700 1.20255 1.19648 1.15915 1.20508 0.87274 0.85718 0.75535 1.90611 1.16420 1.88056 1.52199 1.22016 1.01134 0.87041 1.06944 0.83790 1.22763 1.01776 0.97696 0.88538 1.21489 1.01501 0.96623 1.03564 1.22563 0.90123 1.02249 1.02799 1.22840 0.98277 0.93340 0.98855 0.93454 0.87821 0.90034 0.96516 0.92863 0.92175 0.89210 0.83574 0.91565 0.87523 0.85228 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 10.05 127.77 1.28 3.68 16 2 N -0.61 -25.95 2.86 -851.15 -2.43 -28.38 16 3 C 0.22 11.34 4.27 85.63 0.37 11.70 16 4 C -0.54 -33.11 9.94 25.60 0.25 -32.86 16 5 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 6 C 0.01 0.54 5.47 84.66 0.46 1.00 16 7 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 8 Si 0.95 45.46 27.47 68.60 1.88 47.35 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 12 C 0.52 22.53 7.46 87.66 0.65 23.18 16 13 O -0.59 -31.57 15.82 -3.03 -0.05 -31.62 16 14 C -0.15 -4.54 4.80 -11.54 -0.06 -4.59 16 15 H 0.14 3.56 7.26 -2.39 -0.02 3.54 16 16 C -0.07 -1.59 10.23 30.59 0.31 -1.28 16 17 C -0.23 -6.42 5.05 -52.19 -0.26 -6.68 16 18 C -0.14 -4.07 10.16 30.59 0.31 -3.76 16 19 C -0.10 -2.06 10.53 30.59 0.32 -1.74 16 20 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.10 2.18 6.64 -2.39 -0.02 2.16 16 22 H 0.08 2.18 7.89 -2.39 -0.02 2.16 16 23 H 0.02 0.91 6.85 -2.39 -0.02 0.90 16 24 H 0.05 2.44 6.95 -2.39 -0.02 2.42 16 25 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 26 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 27 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.11 2.70 8.14 -2.39 -0.02 2.69 16 30 H 0.13 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -80.36 267.79 4.40 -75.96 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.05 Total: 9.07 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 3.65 Total: -11.34 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -2.13 Total: -89.41 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.05 Total: -31.62 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -80.36 4.40 -75.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705149220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.431 kcal (2) G-P(sol) polarization free energy of solvation -80.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds