Wall clock time and date at job start Sun Mar 29 2020 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 N 1.46493 * 109.47395 * 120.00906 * 2 1 3 13 13 C 1.34784 * 119.99775 * 274.99719 * 12 2 1 14 14 O 1.21277 * 119.99957 * 359.97438 * 13 12 2 15 15 C 1.50696 * 119.99979 * 180.02562 * 13 12 2 16 16 H 1.09003 * 115.55048 * 325.66575 * 15 13 12 17 17 C 1.53001 * 117.50195 * 111.38032 * 15 13 12 18 18 C 1.52992 * 59.99838 * 107.48700 * 17 15 13 19 19 C 1.52998 * 138.58519 * 130.88846 * 18 17 15 20 20 C 1.53000 * 138.59031 * 229.10569 * 18 17 15 21 21 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 23 23 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 24 24 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 25 25 H 0.96993 * 120.00535 * 95.00145 * 12 2 1 26 26 H 1.08993 * 117.49859 * 214.97860 * 17 15 13 27 27 H 1.09007 * 117.49533 * 359.97438 * 17 15 13 28 28 H 1.09001 * 117.50113 * 238.38348 * 19 18 17 29 29 H 1.09000 * 117.49703 * 23.41476 * 19 18 17 30 30 H 1.08997 * 117.49619 * 336.59760 * 20 18 17 31 31 H 1.08996 * 117.49525 * 121.60190 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 3.1471 -2.2860 -3.6041 10 1 1.1613 -1.5953 -4.8129 11 1 3.1362 -0.1881 -4.8200 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3571 14 8 1.8592 1.1583 2.4116 15 6 2.6501 -0.7289 3.5873 16 1 2.3530 -1.7734 3.6815 17 6 4.0318 -0.3366 4.1143 18 6 2.7741 0.0891 4.8742 19 6 2.2350 0.0643 6.3059 20 6 2.1793 1.3573 5.4896 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.6955 1.1524 -3.4842 25 1 2.2491 -1.6318 1.1523 26 1 4.6442 -1.1232 4.5552 27 1 4.5773 0.4350 3.5710 28 1 1.2961 -0.4610 6.4812 29 1 2.9618 0.0119 7.1165 30 1 2.8695 2.1553 5.7632 31 1 1.2040 1.6826 5.1276 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707835256.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:16 Heat of formation + Delta-G solvation = -6.840725 kcal Electronic energy + Delta-G solvation = -13490.829509 eV Core-core repulsion = 11159.124242 eV Total energy + Delta-G solvation = -2331.705267 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.85253 -38.50785 -36.60792 -34.34659 -33.48654 -30.83605 -27.37735 -25.37290 -23.25629 -22.60733 -21.22742 -20.21465 -18.72100 -17.55488 -17.15393 -16.16678 -16.06307 -15.83996 -15.19107 -15.05774 -14.44507 -13.76990 -13.43912 -13.01661 -12.94057 -12.78008 -12.58015 -12.33515 -12.29777 -12.12584 -11.14465 -11.12226 -11.00200 -10.89121 -10.67431 -10.52287 -9.75326 -8.19099 -6.37216 1.44119 1.44661 1.57399 1.66555 2.29361 2.48383 2.80227 3.01657 3.11558 3.39764 3.88003 3.95265 4.20587 4.53751 4.64317 4.73674 4.76912 4.79047 4.83143 4.88890 5.03684 5.06358 5.07655 5.29807 5.41309 5.60070 5.67131 5.89437 6.07966 6.71135 6.98325 7.30956 7.57117 8.87636 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064418 B = 0.006768 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.556185 B = 4135.929152 C = 4357.052093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.283 1.283 12 N -0.703 5.703 13 C 0.520 3.480 14 O -0.598 6.598 15 C -0.148 4.148 16 H 0.149 0.851 17 C -0.085 4.085 18 C -0.226 4.226 19 C -0.095 4.095 20 C -0.139 4.139 21 H 0.041 0.959 22 H 0.009 0.991 23 H 0.067 0.933 24 H 0.266 0.734 25 H 0.405 0.595 26 H 0.142 0.858 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.589 -6.498 13.201 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.351 5.351 13 C 0.307 3.693 14 O -0.480 6.480 15 C -0.169 4.169 16 H 0.167 0.833 17 C -0.122 4.122 18 C -0.227 4.227 19 C -0.131 4.131 20 C -0.176 4.176 21 H 0.060 0.940 22 H 0.028 0.972 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.240 0.760 26 H 0.160 0.840 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.293 -5.563 13.071 14.840 hybrid contribution -0.048 -0.213 -1.285 1.303 sum 4.244 -5.776 11.786 13.795 Atomic orbital electron populations 1.21899 0.98388 0.99465 0.99453 1.18348 0.91089 0.91853 0.82140 0.98696 1.21578 1.32475 1.13623 0.90735 0.90770 1.25854 0.94820 0.95613 1.02485 1.70067 1.36844 1.24288 1.24610 0.85232 0.78103 0.78479 0.78125 1.18256 1.20333 1.20920 1.46240 1.65049 1.14272 1.09542 1.20501 0.77215 0.86624 0.84923 1.90611 1.53054 1.18418 1.85961 1.22036 1.04046 1.00435 0.90381 0.83306 1.22729 0.88090 1.02525 0.98863 1.21435 1.02949 1.04382 0.93943 1.22865 1.02460 0.97982 0.89820 1.22589 1.01313 0.91502 1.02165 0.94000 0.97228 0.91383 0.92513 0.75953 0.84035 0.89930 0.87737 0.85663 0.88005 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 2 C 0.27 14.49 2.57 44.25 0.11 14.60 16 3 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 4 C -0.55 -29.51 8.73 25.60 0.22 -29.28 16 5 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.66 5.30 84.65 0.45 1.10 16 7 N -0.92 -53.71 11.30 21.45 0.24 -53.46 16 8 Si 0.98 42.37 29.54 68.60 2.03 44.39 16 9 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 N -0.70 -30.52 5.07 -446.10 -2.26 -32.79 16 13 C 0.52 22.00 7.58 87.65 0.66 22.67 16 14 O -0.60 -31.01 15.91 -3.02 -0.05 -31.05 16 15 C -0.15 -4.40 6.19 -11.54 -0.07 -4.47 16 16 H 0.15 3.44 8.14 -2.39 -0.02 3.42 16 17 C -0.09 -2.09 10.23 30.59 0.31 -1.78 16 18 C -0.23 -6.13 5.05 -52.19 -0.26 -6.39 16 19 C -0.09 -1.87 10.53 30.60 0.32 -1.54 16 20 C -0.14 -3.79 10.16 30.60 0.31 -3.48 16 21 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.07 3.89 6.05 -2.39 -0.01 3.88 16 24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.41 14.71 8.54 -92.71 -0.79 13.92 16 26 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -69.39 270.23 3.02 -66.38 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.33 Total: 21.45 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 2.73 Total: -14.92 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -2.02 Total: -86.25 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -69.39 3.02 -66.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707835256.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.536 kcal (2) G-P(sol) polarization free energy of solvation -69.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds