Wall clock time and date at job start Sun Mar 29 2020 21:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 90.00191 * 8 6 4 10 10 H 1.48503 * 109.46900 * 210.00227 * 8 6 4 11 11 H 1.48494 * 109.46968 * 329.99883 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 H 1.09001 * 115.54758 * 34.32883 * 15 13 12 17 17 C 1.52996 * 117.50175 * 248.62469 * 15 13 12 18 18 C 1.52989 * 59.99981 * 252.50722 * 17 15 13 19 19 C 1.52994 * 138.58982 * 130.89053 * 18 17 15 20 20 C 1.52988 * 138.59036 * 229.11105 * 18 17 15 21 21 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 22 22 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 23 23 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 24 24 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 25 25 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 26 26 H 1.09006 * 117.49964 * 359.97438 * 17 15 13 27 27 H 1.08993 * 117.50126 * 145.01495 * 17 15 13 28 28 H 1.09003 * 117.49825 * 238.38295 * 19 18 17 29 29 H 1.08998 * 117.49776 * 23.40089 * 19 18 17 30 30 H 1.09006 * 117.49686 * 336.58657 * 20 18 17 31 31 H 1.08998 * 117.50183 * 121.59027 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 1 3.4042 -1.5023 3.4057 17 6 1.6739 -0.9432 4.7336 18 6 2.7903 0.0938 4.8701 19 6 2.9526 1.5571 5.2864 20 6 3.8743 0.4873 5.8754 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7094 1.1618 -3.4844 25 1 2.2491 -1.6318 1.1526 26 1 0.6572 -0.5733 4.6008 27 1 1.7681 -1.8631 5.3106 28 1 3.3808 2.2436 4.5561 29 1 2.1913 1.9815 5.9410 30 1 3.7194 0.2079 6.9176 31 1 4.9089 0.4697 5.5327 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707835259.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:19 Heat of formation + Delta-G solvation = -6.917428 kcal Electronic energy + Delta-G solvation = -13491.686948 eV Core-core repulsion = 11159.978355 eV Total energy + Delta-G solvation = -2331.708593 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.85201 -38.50706 -36.60517 -34.34614 -33.48546 -30.84539 -27.37048 -25.35078 -23.25774 -22.64834 -21.19994 -20.21228 -18.71133 -17.59733 -17.14850 -16.18496 -15.94648 -15.78157 -15.45529 -14.94297 -14.39262 -13.84386 -13.38966 -13.04392 -12.92078 -12.75360 -12.56595 -12.34281 -12.29960 -12.15410 -11.15001 -11.11573 -11.01409 -10.89120 -10.66632 -10.52438 -9.75264 -8.19134 -6.37351 1.44067 1.45282 1.55956 1.66600 2.29943 2.47967 2.80152 3.01769 3.11166 3.39749 3.87901 3.95225 4.21004 4.53797 4.64534 4.73790 4.76777 4.79111 4.83313 4.89465 5.03510 5.05662 5.08779 5.29678 5.41420 5.59751 5.67204 5.89679 6.07828 6.70743 6.98357 7.30772 7.57137 8.87438 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061310 B = 0.006682 C = 0.006542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.586398 B = 4189.196277 C = 4278.858303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.703 5.703 13 C 0.520 3.480 14 O -0.599 6.599 15 C -0.150 4.150 16 H 0.148 0.852 17 C -0.082 4.082 18 C -0.227 4.227 19 C -0.139 4.139 20 C -0.096 4.096 21 H 0.009 0.991 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.266 0.734 25 H 0.405 0.595 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -6.597 13.302 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.351 5.351 13 C 0.307 3.693 14 O -0.481 6.481 15 C -0.170 4.170 16 H 0.165 0.835 17 C -0.119 4.119 18 C -0.228 4.228 19 C -0.175 4.175 20 C -0.132 4.132 21 H 0.028 0.972 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.240 0.760 26 H 0.103 0.897 27 H 0.160 0.840 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.144 0.856 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.844 -5.654 13.168 14.837 hybrid contribution 0.085 -0.198 -1.312 1.329 sum 3.928 -5.852 11.857 13.793 Atomic orbital electron populations 1.21884 0.98292 0.99475 0.99426 1.18345 0.91172 0.91805 0.82092 0.98742 1.21553 1.32684 1.13590 0.90790 0.90808 1.25854 0.94838 0.95575 1.02466 1.70062 1.37060 1.23956 1.24675 0.85285 0.78988 0.78005 0.77693 1.19465 1.21182 1.18793 1.46241 1.65095 1.14131 1.09636 1.20499 0.77239 0.86610 0.84915 1.90613 1.53300 1.18330 1.85811 1.22034 1.05401 1.02881 0.86713 0.83468 1.22731 0.93192 0.99528 0.96438 1.21436 1.04513 0.98465 0.98362 1.22583 1.02868 0.89983 1.02111 1.22858 0.94371 0.98588 0.97420 0.97158 0.91486 0.93954 0.92502 0.75955 0.89734 0.84010 0.90909 0.87894 0.85601 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.50 2.56 44.24 0.11 14.62 16 3 H -0.01 -0.34 7.57 -2.39 -0.02 -0.36 16 4 C -0.55 -29.68 8.73 25.60 0.22 -29.45 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.69 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.98 42.41 29.54 68.60 2.03 44.43 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 12 N -0.70 -30.55 5.07 -446.09 -2.26 -32.81 16 13 C 0.52 22.02 7.58 87.66 0.66 22.68 16 14 O -0.60 -31.02 15.91 -3.04 -0.05 -31.07 16 15 C -0.15 -4.44 6.19 -11.54 -0.07 -4.51 16 16 H 0.15 3.46 8.14 -2.39 -0.02 3.44 16 17 C -0.08 -1.97 10.23 30.59 0.31 -1.65 16 18 C -0.23 -6.15 5.05 -52.19 -0.26 -6.41 16 19 C -0.14 -3.80 10.16 30.59 0.31 -3.49 16 20 C -0.10 -1.91 10.53 30.59 0.32 -1.59 16 21 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 22 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 23 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.41 14.72 8.54 -92.71 -0.79 13.93 16 26 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.45 270.27 3.02 -66.43 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.33 Total: 21.42 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 2.73 Total: -14.93 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.02 Total: -86.29 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.45 3.02 -66.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707835259.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.513 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds