Wall clock time and date at job start Sun Mar 29 2020 21:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47276 * 2 1 4 4 C 1.50693 * 109.47591 * 120.00536 * 2 1 3 5 5 H 1.07997 * 120.00807 * 120.00214 * 4 2 1 6 6 C 1.37887 * 119.99698 * 300.00110 * 4 2 1 7 7 N 1.31516 * 119.99948 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47310 * 59.99637 * 8 6 4 10 10 H 1.48500 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46954 * 299.99911 * 8 6 4 12 12 N 1.46508 * 109.47214 * 240.00515 * 2 1 3 13 13 C 1.34776 * 119.99949 * 84.99430 * 12 2 1 14 14 O 1.21277 * 120.00126 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99781 * 180.02562 * 13 12 2 16 16 H 1.09000 * 115.56165 * 34.29599 * 15 13 12 17 17 C 1.53005 * 117.49606 * 248.61061 * 15 13 12 18 18 C 1.52995 * 60.03007 * 252.49919 * 17 15 13 19 19 C 1.52999 * 138.58973 * 229.12087 * 18 17 15 20 20 C 1.52992 * 138.58961 * 130.90188 * 18 17 15 21 21 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47160 * 299.99405 * 1 2 3 23 23 H 1.09001 * 109.47563 * 59.99689 * 1 2 3 24 24 H 0.96996 * 119.99993 * 180.02562 * 7 6 4 25 25 H 0.97000 * 119.99701 * 264.99800 * 12 2 1 26 26 H 1.09002 * 117.50166 * 0.02562 * 17 15 13 27 27 H 1.09002 * 117.49677 * 145.00204 * 17 15 13 28 28 H 1.08994 * 117.49863 * 336.59580 * 19 18 17 29 29 H 1.08996 * 117.49928 * 121.61806 * 19 18 17 30 30 H 1.08994 * 117.50298 * 238.38849 * 20 18 17 31 31 H 1.09002 * 117.49768 * 23.38316 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8077 -1.1191 4.0075 10 1 1.8280 -0.4194 5.2203 11 1 1.8282 -2.5200 4.0079 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8588 1.1587 -2.4115 15 6 2.6487 -0.7286 -3.5879 16 1 2.3515 -1.7730 -3.6820 17 6 4.0304 -0.3369 -4.1156 18 6 2.7729 0.0897 -4.8755 19 6 2.2337 0.0653 -6.3071 20 6 2.1792 1.3583 -5.4909 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.7095 1.1616 3.4844 25 1 2.2490 -1.6317 -1.1528 26 1 4.5767 0.4343 -3.5725 27 1 4.6423 -1.1238 -4.5567 28 1 2.9603 0.0121 -7.1178 29 1 1.2944 -0.4592 -6.4822 30 1 1.2041 1.6844 -5.1291 31 1 2.8700 2.1559 -5.7643 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707835261.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:20 Heat of formation + Delta-G solvation = -6.777136 kcal Electronic energy + Delta-G solvation = -13489.893757 eV Core-core repulsion = 11158.191248 eV Total energy + Delta-G solvation = -2331.702509 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84995 -38.50560 -36.60497 -34.34427 -33.48638 -30.83824 -27.37159 -25.37177 -23.25670 -22.60485 -21.22659 -20.21496 -18.71800 -17.54955 -17.14933 -16.17232 -16.06257 -15.84033 -15.19052 -15.05938 -14.43764 -13.75933 -13.43930 -13.02144 -12.92928 -12.76833 -12.58063 -12.33448 -12.28433 -12.16096 -11.16354 -11.12620 -11.00187 -10.89133 -10.65914 -10.51837 -9.75368 -8.18662 -6.36925 1.44490 1.47121 1.55064 1.66548 2.29430 2.48631 2.80146 3.01694 3.11782 3.39565 3.87985 3.95270 4.20581 4.53724 4.64323 4.73683 4.76891 4.78999 4.83096 4.88838 5.03686 5.06282 5.07591 5.29787 5.41269 5.59831 5.67004 5.89646 6.07764 6.70887 6.98421 7.31062 7.57158 8.87736 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064369 B = 0.006768 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.886704 B = 4136.248137 C = 4356.831493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.703 5.703 13 C 0.520 3.480 14 O -0.599 6.599 15 C -0.148 4.148 16 H 0.149 0.851 17 C -0.085 4.085 18 C -0.226 4.226 19 C -0.095 4.095 20 C -0.139 4.139 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.009 0.991 24 H 0.266 0.734 25 H 0.405 0.595 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 -6.503 -13.175 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.351 5.351 13 C 0.307 3.693 14 O -0.481 6.481 15 C -0.169 4.169 16 H 0.167 0.833 17 C -0.122 4.122 18 C -0.227 4.227 19 C -0.131 4.131 20 C -0.176 4.176 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.028 0.972 24 H 0.075 0.925 25 H 0.241 0.759 26 H 0.101 0.899 27 H 0.160 0.840 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.252 -5.561 -13.040 14.800 hybrid contribution -0.026 -0.227 1.272 1.292 sum 4.226 -5.788 -11.768 13.779 Atomic orbital electron populations 1.21895 0.98390 0.99456 0.99430 1.18337 0.91079 0.91836 0.82106 0.98717 1.21521 1.32730 1.13652 0.90762 0.90768 1.25857 0.94811 0.95584 1.02469 1.70055 1.36999 1.23968 1.24734 0.85339 0.78642 0.78688 0.77309 1.19515 1.21125 1.18735 1.46244 1.65044 1.14272 1.09548 1.20499 0.77215 0.86626 0.84928 1.90611 1.53045 1.18424 1.85971 1.22050 1.04056 1.00432 0.90369 0.83298 1.22729 0.88097 1.02524 0.98857 1.21446 1.02952 1.04373 0.93932 1.22861 1.02462 0.97978 0.89820 1.22586 1.01322 0.91498 1.02165 0.93993 0.91430 0.97216 0.92500 0.75949 0.89941 0.84036 0.85663 0.87736 0.90785 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.53 2.56 44.24 0.11 14.65 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 4 C -0.55 -29.66 8.73 25.60 0.22 -29.43 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 N -0.70 -30.54 5.07 -446.10 -2.26 -32.80 16 13 C 0.52 22.02 7.58 87.66 0.66 22.68 16 14 O -0.60 -31.03 15.91 -3.02 -0.05 -31.08 16 15 C -0.15 -4.41 6.19 -11.51 -0.07 -4.48 16 16 H 0.15 3.44 8.14 -2.39 -0.02 3.42 16 17 C -0.09 -2.09 10.23 30.59 0.31 -1.78 16 18 C -0.23 -6.13 5.06 -52.16 -0.26 -6.39 16 19 C -0.09 -1.87 10.53 30.60 0.32 -1.54 16 20 C -0.14 -3.79 10.17 30.59 0.31 -3.48 16 21 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.07 3.86 6.07 -2.38 -0.01 3.85 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.41 14.71 8.54 -92.71 -0.79 13.91 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -69.36 270.28 3.02 -66.35 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.33 Total: 21.62 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 2.73 Total: -14.96 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -2.02 Total: -86.28 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.05 Total: -31.08 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.36 3.02 -66.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707835261.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.570 kcal (2) G-P(sol) polarization free energy of solvation -69.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds