Wall clock time and date at job start Sun Mar 29 2020 21:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35311 * 126.12914 * 85.00127 * 3 2 1 5 5 C 1.39868 * 107.92268 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.89832 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.46553 * 95.00803 * 6 5 4 8 8 C 1.46903 * 110.99869 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47037 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00388 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99721 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99727 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00149 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46854 * 90.00162 * 13 11 9 15 15 H 1.48497 * 109.46918 * 210.00236 * 13 11 9 16 16 H 1.48503 * 109.46745 * 330.00188 * 13 11 9 17 17 N 1.30838 * 108.20045 * 0.02562 * 5 4 3 18 18 N 1.34949 * 126.12555 * 264.68786 * 3 2 1 19 19 H 0.97005 * 126.03781 * 0.04587 * 18 3 2 20 20 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 25 25 H 1.08000 * 126.03504 * 359.94205 * 4 3 2 26 26 H 1.09001 * 109.47004 * 215.00123 * 6 5 4 27 27 H 1.08993 * 109.47159 * 335.00714 * 6 5 4 28 28 H 1.00898 * 111.00442 * 303.95265 * 7 6 5 29 29 H 1.08998 * 109.47297 * 299.99619 * 8 7 6 30 30 H 1.08999 * 109.47055 * 60.00063 * 8 7 6 31 31 H 0.96996 * 119.99670 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2084 2.2048 1.0887 5 6 2.6877 3.4446 0.6534 6 6 3.0217 4.6214 1.5336 7 7 4.4577 4.6092 1.8431 8 6 4.8209 5.7451 2.7010 9 6 6.2978 5.6989 2.9970 10 1 6.9058 4.9049 2.5892 11 6 6.8728 6.6697 3.7896 12 7 8.1618 6.6296 4.0475 13 14 5.8211 8.0426 4.4958 14 1 5.2899 7.6284 5.8191 15 1 6.6467 9.2666 4.6548 16 1 4.6909 8.3240 3.5746 17 7 2.7950 3.4065 -0.6500 18 7 2.3926 2.1373 -1.0853 19 1 2.3736 1.8289 -2.0049 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 2.0129 1.9231 2.1128 26 1 2.7697 5.5463 1.0148 27 1 2.4499 4.5566 2.4593 28 1 4.7289 3.7346 2.2667 29 1 4.5815 6.6776 2.1899 30 1 4.2616 5.6886 3.6348 31 1 8.5663 7.3128 4.6048 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819053864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:47 Heat of formation + Delta-G solvation = 62.182412 kcal Electronic energy + Delta-G solvation = -12998.787537 eV Core-core repulsion = 10702.368089 eV Total energy + Delta-G solvation = -2296.419448 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.10149 -35.65973 -34.11415 -32.50987 -31.12319 -28.96086 -27.82565 -24.52959 -23.92670 -21.06703 -20.32747 -19.57330 -17.30325 -16.71168 -15.12204 -14.89135 -14.56272 -14.09878 -13.94492 -13.41768 -13.35578 -13.00987 -12.49840 -12.36072 -12.00040 -11.64308 -11.47897 -11.23436 -10.71612 -10.46878 -10.25088 -9.80562 -9.26609 -9.13186 -8.55830 -8.48470 -7.43229 -6.01548 -3.99333 1.99282 2.93038 2.98710 3.32206 3.39707 3.43058 4.46164 4.47220 4.70442 4.90210 5.01001 5.20391 5.30633 5.38108 5.48493 5.56725 5.71358 5.83570 5.88322 5.95966 6.08766 6.32983 6.78597 6.82478 7.04873 7.39927 7.64174 7.90600 7.93176 8.37803 8.69341 9.07073 9.60125 11.11866 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.067151 B = 0.005370 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.872504 B = 5213.262686 C = 5267.746588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C 0.081 3.919 4 C -0.264 4.264 5 C 0.094 3.906 6 C 0.132 3.868 7 N -0.672 5.672 8 C 0.164 3.836 9 C -0.515 4.515 10 H 0.079 0.921 11 C 0.068 3.932 12 N -0.901 5.901 13 Si 0.879 3.121 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.266 1.266 17 N -0.275 5.275 18 N -0.481 5.481 19 H 0.433 0.567 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.144 0.856 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.337 0.663 29 H 0.029 0.971 30 H -0.018 1.018 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 -12.103 -6.754 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.048 4.048 4 C -0.294 4.294 5 C -0.074 4.074 6 C 0.001 3.999 7 N -0.304 5.304 8 C 0.037 3.963 9 C -0.553 4.553 10 H 0.097 0.903 11 C -0.134 4.134 12 N -0.540 5.540 13 Si 0.706 3.294 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.191 1.191 17 N -0.098 5.098 18 N -0.189 5.189 19 H 0.276 0.724 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.161 0.839 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.155 0.845 29 H 0.047 0.953 30 H -0.001 1.001 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.389 -11.006 -8.263 20.645 hybrid contribution -0.975 -0.146 1.494 1.790 sum -16.364 -11.151 -6.770 20.928 Atomic orbital electron populations 1.21750 0.94112 1.02004 1.02606 1.20193 0.96373 0.89596 1.03810 1.21010 1.00359 0.95304 0.88118 1.21159 1.14529 0.94558 0.99128 1.22361 0.97228 0.96212 0.91594 1.20274 0.91415 0.93423 0.94813 1.60446 1.11509 1.07288 1.51128 1.20038 0.97015 0.89817 0.89452 1.21058 0.91507 1.12521 1.30224 0.90297 1.24906 0.94877 0.97644 0.95931 1.69903 1.10445 1.35160 1.38519 0.86806 0.80782 0.82076 0.79749 1.20322 1.21181 1.19058 1.77408 1.21484 0.97731 1.13147 1.46354 1.53435 1.10709 1.08364 0.72407 0.92768 0.91926 0.91892 0.89159 0.90865 0.83859 0.90238 0.94068 0.84517 0.95339 1.00065 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.06 -0.47 6.48 -27.88 -0.18 -0.65 16 3 C 0.08 0.97 6.46 -82.26 -0.53 0.44 16 4 C -0.26 -3.77 10.65 -40.01 -0.43 -4.19 16 5 C 0.09 1.61 6.73 -82.40 -0.55 1.05 16 6 C 0.13 2.42 6.25 -4.98 -0.03 2.39 16 7 N -0.67 -14.84 6.48 -116.34 -0.75 -15.60 16 8 C 0.16 4.11 4.51 -4.97 -0.02 4.09 16 9 C -0.51 -15.14 9.87 -34.44 -0.34 -15.48 16 10 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 13 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 17 N -0.27 -4.79 12.70 33.67 0.43 -4.36 16 18 N -0.48 -6.26 7.36 33.48 0.25 -6.01 16 19 H 0.43 4.12 8.96 -182.61 -1.64 2.48 16 20 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.34 7.24 8.72 -39.29 -0.34 6.90 16 29 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 30 H -0.02 -0.44 7.57 -51.93 -0.39 -0.83 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 268.89 15.07 4.05 4.05 Total: -1.00 -33.54 268.89 -7.46 -40.99 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.72 Total: 2.20 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.82 Total: -11.07 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.69 Total: -53.37 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.54 -7.46 -40.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819053864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.176 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds